RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CDH17Q12864 832 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 DGCR6Q14129 220 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ACAP2Q15057 778 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PTPRRQ15256 657 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 FAM83EQ2M2I3 478 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF284Q2VY69 593 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 UAP1L1Q3KQV9 507 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 YIF1BQ5BJH7 314 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 COQ5Q5HYK3 327 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 DENND5AQ6IQ26 1287 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 KDELC1Q6UW63 502 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 LYPD8Q6UX82 237 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 RANBP10Q6VN20 620 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PROSER1Q86XN7 944 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 RIMKLAQ8IXN7 391 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 KLHDC8BQ8IXV7 354 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SLC22A15Q8IZD6 547 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 MIER2Q8N344 545 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SPATA6LQ8N4H0 392 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PSD4Q8NDX1 1056 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TOR1AIP2Q8NFQ8 470 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 MCOLN3Q8TDD5 553 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TMEM125Q96AQ2 219 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CCDC126Q96EE4 140 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 DMRTB1Q96MA1 342 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 GPR78Q96P69 363 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 MBOAT4Q96T53 435 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TTYH2Q9BSA4 534 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 B3GNT4Q9C0J1 378 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 REXO4Q9GZR2 422 aaKnown RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 C6orf62Q9GZU0 229 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TNFRSF12AQ9NP84 129 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ATP13A2Q9NQ11 1180 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PLSCR3Q9NRY6 295 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 OPTCQ9UBM4 332 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SUSD2Q9UGT4 822 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CDV3Q9UKY7 258 aaKnown RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PNMA8BQ9ULN7 279 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PCDHGC4Q9Y5F7 938 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TDRD6O60522 2096 aaKnown RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ARID1BQ8NFD5 2236 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CHD8Q9HCK8 2581 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 AKAP13Q12802 2813 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 A0A1W2PR77 199 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 IGLON5A6NGN9 336 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 METTL15A6NJ78 407 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 EFCAB9A8MZ26 197 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 G3V2T6 193 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PRSS23O95084 383 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 YES1P07947 543 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 STMN1P16949 149 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CTRB1P17538 263 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CHRM3P20309 590 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ACVR2AP27037 513 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 S100A5P33763 92 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PIGAP37287 484 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ETV3P41162 512 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 HTR2BP41595 481 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CSNK1DP48730 415 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CLDN2P57739 230 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 YBX1P67809 324 aaKnown RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 NFYCQ13952 458 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CLCA4Q14CN2 919 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 UGP2Q16851 508 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 RABL3Q5HYI8 236 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TPRG1LQ5T0D9 272 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SYT6Q5T7P8 510 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CTRB2Q6GPI1 263 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 LAIR2Q6ISS4 152 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF438Q7Z4V0 828 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TRIM69Q86WT6 500 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PARP16Q8N5Y8 322 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 OR5H6Q8NGV6 325 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 DNAJB14Q8TBM8 379 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 NETO1Q8TDF5 533 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PIK3R3Q92569 461 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF566Q969W8 418 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 C19orf60Q96EN9 201 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ST6GAL2Q96JF0 529 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 NSMCE2Q96MF7 247 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SMIM14Q96QK8 99 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 MGME1Q9BQP7 344 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TRIM8Q9BZR9 551 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 AMBRA1Q9C0C7 1298 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 DCSTAMPQ9H295 470 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CYP4F12Q9HCS2 524 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TMEM9BQ9NQ34 198 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 C12orf4Q9NQ89 552 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 AASDHPPTQ9NRN7 309 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TOR4AQ9NXH8 423 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 GRIP1Q9Y3R0 1128 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 MAGED1Q9Y5V3 778 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SNX11Q9Y5W9 270 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TP53BP1Q12888 1972 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-216ENST00000552909 A0A0U1RQS6 177 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 LOC100130705A0A1B0GUX0 176 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 A0A1W2PQ72 361 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 NEMP2A6NFY4 417 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 C12orf71A8MTZ7 269 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 A8MV72 311 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms