RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 EDIL3O43854 480 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 PLEKHA8P1O95397 391 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CLDN7O95471 211 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CYC1P08574 325 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 OR52Z1P0C646 297 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF883P0CG24 379 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 NR2F2P24468 414 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 NMBRP28336 390 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 DCTDP32321 178 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ACADVLP49748 655 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 RARRES1P49788 294 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ENTPD1P49961 510 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CACNA2D1P54289 1103 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 RAD23BP54727 409 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 MLLT10P55197 1068 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SNU13P55769 128 aaKnown RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 BPIFB3P59826 476 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 KRTAP10-11P60412 298 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 TUBA4AP68366 448 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 TUBB4BP68371 445 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CSNK2A1P68400 391 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ZXDBP98169 803 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ACTN3Q08043 901 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ACSM1Q08AH1 577 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ELAVL2Q12926 359 aaKnown RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 TRAF1Q13077 416 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 PLA2G7Q13093 441 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 TGIF1Q15583 401 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 MEP1BQ16820 701 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 UPP1Q16831 310 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 C2orf68Q2NKX9 166 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ZRANB3Q5FWF4 1079 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 LRRC73Q5JTD7 316 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 FAM91A1Q658Y4 838 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 HIST2H2BDQ6DRA6 164 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 KCTD18Q6PI47 426 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 GBP6Q6ZN66 633 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ANO5Q75V66 913 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SHFQ7M4L6 423 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 RABEPKQ7Z6M1 372 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 PATL1Q86TB9 770 aaKnown RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CNGA4Q8IV77 575 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CSNK2A3Q8NEV1 391 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SPATA20Q8TB22 786 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 UTP15Q8TED0 518 aaKnown RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ATL1Q8WXF7 558 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 DNASE2BQ8WZ79 361 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SNAPC3Q92966 411 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 EXT2Q93063 718 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SLAMF9Q96A28 289 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ORAI1Q96D31 301 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ARSGQ96EG1 525 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 BSCL2Q96G97 398 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 EGLN2Q96KS0 407 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF578Q96N58 590 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 DACH2Q96NX9 599 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SH3GL2Q99962 352 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SLX1AQ9BQ83 275 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 UBAC1Q9BSL1 405 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 XPO4Q9C0E2 1151 aaKnown RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 MAGIXQ9H6Y5 334 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ASCL3Q9NQ33 180 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 EQTNQ9NQ60 294 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF71Q9NQZ8 489 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 SIRT3Q9NTG7 399 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 TMEM51Q9NW97 253 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 HPF1Q9NWY4 346 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 LEF1Q9UJU2 399 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 AGO2Q9UKV8 859 aaKnown RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 NFE2L3Q9Y4A8 694 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 MYOFQ9NZM1 2061 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 PRRC2CQ9Y520 2896 aaKnown RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ABCA2Q9BZC7 2435 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 MAP1AP78559 2803 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-208ENST00000551691 A0A087WWV3 80 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 CLDN4O14493 209 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 CASC3O15234 703 aaKnown RBP3.61□□□□□ -1.83
LIMA1-208ENST00000551691 EIF3DO15371 548 aaKnown RBP eCLIP3.61□□□□□ -1.83
LIMA1-208ENST00000551691 SPINT2O43291 252 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 SPRY1O43609 319 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-208ENST00000551691 SSX4O60224 188 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 ERLIN2O94905 339 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 FAM58BPP0C7Q3 252 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 CALM1P0DP23 149 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 CALM2P0DP24 149 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 CALM3P0DP25 149 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 GAP43P17677 238 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 WT1P19544 449 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-208ENST00000551691 GNLYP22749 145 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 PTPN3P26045 913 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 CDC25CP30307 473 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 GABRA5P31644 462 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 HPDP32754 393 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-208ENST00000551691 PPP3CCP48454 512 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 CXCR3P49682 368 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 ST8SIA6P61647 398 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 ID2Q02363 134 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 MBTD1Q05BQ5 628 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 KDSRQ06136 332 aa3.61□□□□□ -1.83
LIMA1-208ENST00000551691 PLD1Q13393 1074 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms