RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 FZD3Q9NPG1 666 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 MTMR10Q9NXD2 777 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 FAM92AA1XBS5 289 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 AQP9O43315 295 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 ZNF208O43345 1280 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 CCNOP22674 350 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 RING1Q06587 406 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 ZNF57Q68EA5 555 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 FBXW8Q8N3Y1 598 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 FSTL5Q8N475 847 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 NATD1Q8N6N6 113 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 SNIP1Q8TAD8 396 aaKnown RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 RASSF5Q8WWW0 418 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 TSACCQ96A04 125 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 PPM1MQ96MI6 270 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 LPAR4Q99677 370 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 PBX4Q9BYU1 374 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 SLC17A6Q9P2U8 582 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 C3orf18Q9UK00 162 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 IKZF3Q9UKT9 509 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 STX16-NPEPL1H3BU86 382 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 STX16O14662 325 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 PRODHO43272 600 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 NIPSNAP2O75323 286 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 OR4F21O95013 312 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 IFNW1P05000 195 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 PRPS2P11908 318 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 CEBPBP17676 345 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 EFNA1P20827 205 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 HNRNPA2B1P22626 353 aaKnown RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 RABIFP47224 123 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 SLC6A9P48067 706 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 ACY1Q03154 408 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 CD47Q08722 323 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 SERINC3Q13530 473 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 C1orf53Q5VUE5 145 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 TMEFF1Q8IYR6 380 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 BHLHE22Q8NFJ8 381 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 CMTM7Q96FZ5 175 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 DGCR6LQ9BY27 220 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 SEC61A2Q9H9S3 476 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 MKKSQ9NPJ1 570 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 PISDQ9UG56 409 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 MED31Q9Y3C7 131 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 OR6C74A6NCV1 312 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 CPSF4LA6NMK7 179 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 K7ERQ8 282 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 WBP4O75554 376 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 NMBRP28336 390 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 ZNF41P51814 821 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PSME3P61289 254 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 HSF2Q03933 536 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 DPYSQ14117 519 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 RCAN2Q14206 197 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 MSS51Q4VC12 460 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 KIAA0930Q6ICG6 404 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PROSER1Q86XN7 944 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PARP8Q8N3A8 854 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PHOSPHO1Q8TCT1 267 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PNPLA2Q96AD5 504 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PTCD3Q96EY7 689 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 RADILQ96JH8 1075 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 RETREG1Q9H6L5 497 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 DNMT3BQ9UBC3 853 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 ACAD8Q9UKU7 415 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 RAB26Q9ULW5 256 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PLCL2Q9UPR0 1127 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 DNMT3AQ9Y6K1 912 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 TRIM24O15164 1050 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 KDELR3O43731 214 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PCDH7O60245 1069 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 FARS2O95363 451 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 HBQ1P09105 142 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 OR4D2P58180 307 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 HHEXQ03014 270 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 TOP3AQ13472 1001 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 MRPL58Q14197 206 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 GPR68Q15743 365 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PDZK1Q5T2W1 519 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 SHKBP1Q8TBC3 707 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 POP5Q969H6 163 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 ISOC1Q96CN7 298 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 NEURL2Q9BR09 285 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 KIFC1Q9BW19 673 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 XKR8Q9H6D3 395 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 CDH22Q9UJ99 828 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 GMPPBQ9Y5P6 360 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 ZNF860A6NHJ4 632 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 LILRB3O75022 631 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 ABLIM3O94929 683 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 AHSA1O95433 338 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PCSK2P16519 638 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 FBLP22087 321 aaKnown RBP8.31□□□□□ -1.08
CLIP1-218ENST00000545889 SLC6A4P31645 630 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 MNDAP41218 407 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 EMP3P54852 163 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 SCAPQ12770 1279 aa8.31□□□□□ -1.08
CLIP1-218ENST00000545889 PRKD1Q15139 912 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms