RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 DCAF7P61962 342 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 FLI1Q01543 452 aaPredicted RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 PWP1Q13610 501 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 PYCR3Q53H96 274 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 NXNL2Q5VZ03 156 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 MSANTD2Q6P1R3 559 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 PKN3Q6P5Z2 889 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TMEM65Q6PI78 240 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 LYPD8Q6UX82 237 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 FAM183BPQ6ZVS7 135 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 NLRP8Q86W28 1048 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 METTL23Q86XA0 190 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 GATAD2AQ86YP4 633 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 MICU2Q8IYU8 434 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ZNF567Q8N184 647 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 THEM5Q8N1Q8 247 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 MOSPD2Q8NHP6 518 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 FBXO30Q8TB52 745 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 SLC35F5Q8WV83 523 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 NT5C3BQ969T7 300 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ERLEC1Q96DZ1 483 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TTYH2Q9BSA4 534 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ACPTQ9BZG2 426 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 SOX17Q9H6I2 414 aaPredicted RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 RANBP3Q9H6Z4 567 aaPredicted RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 ERVMER34-1Q9H9K5 563 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 PLSCR3Q9NRY6 295 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 GLRX2Q9NS18 164 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 SEC14L4Q9UDX3 406 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 CD207Q9UJ71 328 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TMPRSS11EQ9UL52 423 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ACSL5Q9ULC5 683 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 DIMT1Q9UNQ2 313 aaKnown RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 SCML2Q9UQR0 700 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 PCDHB14Q9Y5E9 798 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 MIA3Q5JRA6 1907 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ZFC3H1O60293 1989 aaKnown RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 ASPDHA6ND91 283 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TMEM233B4DJY2 109 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CHURC1-FNTBB4DL54 471 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 B4DXG7 233 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 M0R082 166 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 AZIN1O14977 448 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 AXIN1O15169 862 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 GREM1O60565 184 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SMPD2O60906 423 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 IGLV3-27P01718 113 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CDK1P06493 297 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ADORA3P0DMS8 318 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HDCP19113 662 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PSMB4P28070 264 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PER3P56645 1201 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ZNF33BQ06732 778 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TRIP4Q15650 581 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 GRK1Q15835 563 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PPP1R3AQ16821 1122 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 GLYR1Q49A26 553 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 IGSF11Q5DX21 431 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CLVS2Q5SYC1 327 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 OTUD3Q5T2D3 398 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 CXorf57Q6NSI4 855 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 BRAT1Q6PJG6 821 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PRSS55Q6UWB4 352 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 Q7L0L9 218 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 OVCH2Q7RTZ1 564 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 FAM124AQ86V42 546 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 THAP3Q8WTV1 239 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 HEXDCQ8WVB3 486 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ASB12Q8WXK4 309 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SLC47A1Q96FL8 570 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SMARCD1Q96GM5 515 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PCED1BQ96HM7 432 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 FERD3LQ96RJ6 166 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 KCTD15Q96SI1 283 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 SPATA9Q9BWV2 254 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 DUSP16Q9BY84 665 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 C6orf62Q9GZU0 229 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 CHRDQ9H2X0 955 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PIGUQ9H490 435 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CAB39LQ9H9S4 337 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SMURF1Q9HCE7 757 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ENTPD7Q9NQZ7 604 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CNOT2Q9NZN8 540 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 PSORS1C1Q9UIG5 152 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 YIPF1Q9Y548 306 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SNX8Q9Y5X2 465 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 E2F8A0AVK6 867 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HNRNPCL2B2RXH8 293 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ABCD4O14678 606 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 LINC01565O15544 149 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 LATS1O95835 1130 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CST1P01037 141 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 RRASP10301 218 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PIPP12273 146 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 HSD3B1P14060 373 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HK1P19367 917 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 RAB3AP20336 220 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 COL9A1P20849 921 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 IGFBP5P24593 272 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 LMO2P25791 158 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms