RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ZNF556Q9HAH1 456 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 C3orf14Q9HBI5 128 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 IMPAD1Q9NX62 359 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 GRIP1Q9Y3R0 1128 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 YIPF1Q9Y548 306 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 QSOX1O00391 747 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 YY2O15391 372 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 TNFRSF21O75509 655 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF821O75541 412 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 PARNO95453 639 aaKnown RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 OLFM2O95897 454 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 C1QCP02747 245 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 CD22P20273 847 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 IDSP22304 550 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 ITPKAP23677 461 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 TIE1P35590 1138 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 RPL3P39023 403 aaKnown RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 HMGA2P52926 109 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 CDC42P60953 191 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 SPIBQ01892 262 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GAB1Q13480 694 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GCNT6Q5T4J0 391 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 DESI1Q6ICB0 168 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 FAM92BQ6ZTR7 304 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 SLC22A15Q8IZD6 547 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 FAM83FQ8NEG4 500 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 OR52N2Q8NGI0 321 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 BCL7CQ8WUZ0 217 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GEMIN6Q8WXD5 167 aaKnown RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 TMCO6Q96DC7 493 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 EMILIN2Q9BXX0 1053 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 CPEB1Q9BZB8 566 aaKnown RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 POU2F3Q9UKI9 436 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 DUSP12Q9UNI6 340 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 PLXNA2O75051 1894 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GABRR3A8MPY1 467 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 FAM47E-STBD1D6RA91 191 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GCM2O75603 506 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 PTHP01270 115 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 STSP08842 583 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 ALOX12P18054 663 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 TIA1P31483 386 aaKnown RBP eCLIP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GRK5P34947 590 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 LIMS1P48059 325 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GATMP50440 423 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 RAE1P78406 368 aaKnown RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 ST3GAL4Q11206 333 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 XKR6Q5GH73 641 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 AGAP6Q5VW22 663 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GDPGP1Q6ZNW5 385 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 THOC6Q86W42 341 aaKnown RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 TMEM173Q86WV6 379 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 KRT73Q86Y46 540 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 SLC44A2Q8IWA5 706 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 OXR1Q8N573 874 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF461Q8TAF7 563 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 ADAMTS19Q8TE59 1207 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 SKA2Q8WVK7 121 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF486Q96H40 463 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 AGAP4Q96P64 663 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 CLSTN3Q9BQT9 956 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 NUAK2Q9H093 628 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 OR51E2Q9H255 320 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 STARD7Q9NQZ5 370 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 RAD18Q9NS91 495 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 GPR83Q9NYM4 423 aa13.2□□□□□ -0.3
VPS33A-208ENST00000543633 LSM7Q9UK45 103 aaKnown RBP13.2□□□□□ -0.3
VPS33A-208ENST00000543633 CCRL2O00421 344 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 PSIP1O75475 530 aaKnown RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 SLCO2B1O94956 709 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 ANXA4P09525 319 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 C1SP09871 688 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 NUDT7P0C024 238 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 HLA-EP13747 358 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 SELPP16109 830 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 ENDOUP21128 410 aaKnown RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 SPINT3P49223 89 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 SEPHS1P49903 392 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 MVDP53602 400 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 DCDC1P59894 354 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 DOC2AQ14183 400 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF630Q2M218 657 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF362Q5T0B9 420 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF544Q6NX49 715 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 CCBE1Q6UXH8 406 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 HEATR4Q86WZ0 1026 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 VRK3Q8IV63 474 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 MMAAQ8IVH4 418 aaKnown RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 ST13P5Q8NFI4 369 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 OR4A15Q8NGL6 344 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 ASZ1Q8WWH4 475 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 OR2B2Q9GZK3 357 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 SUV39H2Q9H5I1 410 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 BRD9Q9H8M2 597 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 NFKBIL1Q9UBC1 381 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-208ENST00000543633 BTBD3Q9Y2F9 522 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 HCN4Q9Y3Q4 1203 aa13.19□□□□□ -0.3
VPS33A-208ENST00000543633 LOC100506127A0A0U1RQW1 187 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 MGAT4DA6NG13 374 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 NT5C1B-RDH14C9J2C7 533 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms