RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 DNASE1L2Q92874 299 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 PTP4A1Q93096 173 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 PTERQ96BW5 349 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 ITCHQ96J02 903 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 PPM1MQ96MI6 270 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 Q96MT0 163 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 SORCS2Q96PQ0 1159 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 NEDD4LQ96PU5 975 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 TRIB3Q96RU7 358 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 ACOX2Q99424 681 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 MGLLQ99685 303 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 MAPKAP1Q9BPZ7 522 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 SOSTQ9BQB4 213 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 FICDQ9BVA6 458 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 FSD1LQ9BXM9 530 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 ASPNQ9BXN1 380 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 DUSP16Q9BY84 665 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 CATSPERBQ9H7T0 1116 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 ERVMER34-1Q9H9K5 563 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 SCPEP1Q9HB40 452 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 ACSS2Q9NR19 701 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 RGS18Q9NS28 235 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 ERVK13-1Q9NX77 482 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 UBQLN2Q9UHD9 624 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 PCTPQ9UKL6 214 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 IKZF3Q9UKT9 509 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 ADAMTS5Q9UNA0 930 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 CORO2BQ9UQ03 480 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 HSPB11Q9Y547 144 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 PCDHGA6Q9Y5G7 932 aa6.46□□□□□ -1.38
USP28-207ENST00000538475 TMEM265A0A087WTH1 108 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 LOC100506127A0A0U1RQW1 187 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 IRGMA1A4Y4 181 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 FABP12A6NFH5 140 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 NPIPB8E9PQR5 432 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ATP6V1G2-DDX39BF2Z307 99 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 I3L521 148 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PDHXO00330 501 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 BTN3A3O00478 584 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 AP3D1O14617 1153 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 KPNA5O15131 536 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ADAMDEC1O15204 470 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PAX4O43316 350 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PEX14O75381 377 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ITGA10O75578 1167 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 GLP2RO95838 553 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 SERPINA1P01009 418 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 EPOP01588 193 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 HOXD4P09016 255 aaPredicted RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 CNPP09543 421 aaKnown RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 CTSHP09668 335 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 CSF3P09919 207 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PRPS2P11908 318 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PEPDP12955 493 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 LCP1P13796 627 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PFKLP17858 780 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 GABRB1P18505 474 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ATF4P18848 351 aaPredicted RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 GRK4P32298 578 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 SDC2P34741 201 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 CASP2P42575 452 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 KIR2DL3P43628 341 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PLK1P53350 603 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 MTPNP58546 118 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 CD83Q01151 205 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 CREMQ03060 361 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 MBTD1Q05BQ5 628 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 LARS2Q15031 903 aaKnown RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 NCF4Q15080 339 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PCBP2Q15366 365 aaKnown RBP eCLIP6.45□□□□□ -1.38
USP28-207ENST00000538475 TSNQ15631 228 aaKnown RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 TATDN3Q17R31 274 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 SLC10A6Q3KNW5 377 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 CLVS2Q5SYC1 327 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 PXDC1Q5TGL8 231 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 OTUD1Q5VV17 481 aaPredicted RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 CD276Q5ZPR3 534 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 SAXO2Q658L1 398 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 RAP1GAP2Q684P5 730 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 LAIR1Q6GTX8 287 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 SDE2Q6IQ49 451 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 TMEM65Q6PI78 240 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 KDELC1Q6UW63 502 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 TMEM107Q6UX40 140 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ZNF574Q6ZN55 896 aaPredicted RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 Q6ZSR9 355 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 RRM2BQ7LG56 351 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 OVCH2Q7RTZ1 564 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 DNAJB7Q7Z6W7 309 aaPredicted RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 GALNT10Q86SR1 603 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ACOT1Q86TX2 421 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 OSTM1Q86WC4 334 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 RAVER1Q8IY67 606 aaKnown RBP6.45□□□□□ -1.38
USP28-207ENST00000538475 CPXCR1Q8N123 301 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ATPAF2Q8N5M1 289 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 LRRC17Q8N6Y2 441 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 C12orf29Q8N999 325 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 ATG16L2Q8NAA4 619 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 OR7D4Q8NG98 312 aa6.45□□□□□ -1.38
USP28-207ENST00000538475 OR4F6Q8NGB9 312 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms