RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ASPHQ12797 758 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 HYAL2Q12891 473 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 SSPNQ14714 243 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 UGT8Q16880 541 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 COL28A1Q2UY09 1125 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 GGTA1PQ4G0N0 100 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 UNC50Q53HI1 259 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 TNFAIP8L3Q5GJ75 292 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 COX15Q7KZN9 410 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 MYLK4Q86YV6 388 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 METTL27Q8N6F8 245 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 OR7G3Q8NG95 312 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 OR9A4Q8NGU2 314 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 OR2Y1Q8NGV0 311 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 UTP15Q8TED0 518 aaKnown RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 THAP4Q8WY91 577 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 NACC2Q96BF6 587 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 MOCOSQ96EN8 888 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 SMIM10Q96HG1 83 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 PKNOX2Q96KN3 472 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 IP6K3Q96PC2 410 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 RUFY1Q96T51 708 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 CENPHQ9H3R5 247 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 ZBTB26Q9HCK0 441 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 PRM3Q9NNZ6 103 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 SSU72Q9NP77 194 aaKnown RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 MKKSQ9NPJ1 570 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 SEMA4BQ9NPR2 832 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 PSD3Q9NYI0 1048 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 TRPC4Q9UBN4 977 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 PTRH2Q9Y3E5 179 aaKnown RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 ACTL7BQ9Y614 415 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 MRPS18BQ9Y676 258 aaKnown RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 MGAQ8IWI9 3026 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 SCN3AQ9NY46 2000 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 CCDC88CQ9P219 2028 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 H3BQF6 201 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 KLHL18O94889 574 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 IGHEP01854 428 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 ZNF888P0CJ79 500 aaPredicted RBP13.53□□□□□ -0.24
NUP54-216ENST00000514901 PCNAP12004 261 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 IL10P22301 178 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 FOLR3P41439 243 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 CDH13P55290 713 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 CDC20Q12834 499 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 ERV3-1Q14264 604 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 CASP8Q14790 479 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 SLC9A5Q14940 896 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 RBBP7Q16576 425 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 NKG7Q16617 165 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 CPSF6Q16630 551 aaKnown RBP eCLIP13.53□□□□□ -0.24
NUP54-216ENST00000514901 ADPRMQ3LIE5 342 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 TMEM35AQ53FP2 167 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 TOR1AIP1Q5JTV8 583 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 CFAP157Q5JU67 520 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 CHSY3Q70JA7 882 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 VN1R5Q7Z5H4 357 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 AMER3Q8N944 861 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 OR52B6Q8NGF0 335 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 ZCCHC10Q8TBK6 192 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 ZNF473Q8WTR7 871 aaKnown RBP13.53□□□□□ -0.24
NUP54-216ENST00000514901 SREK1Q8WXA9 508 aaKnown RBP13.53□□□□□ -0.24
NUP54-216ENST00000514901 GAL3ST3Q96A11 431 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 MIEF2Q96C03 454 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 CMTM7Q96FZ5 175 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 FAR2Q96K12 515 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 NSUN5Q96P11 429 aaKnown RBP13.53□□□□□ -0.24
NUP54-216ENST00000514901 TMEM237Q96Q45 408 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 YIPF2Q9BWQ6 316 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 TGIF2Q9GZN2 237 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 REXO4Q9GZR2 422 aaKnown RBP13.53□□□□□ -0.24
NUP54-216ENST00000514901 C14orf105Q9NVL8 296 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 OXSMQ9NWU1 459 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 MRPS2Q9Y399 296 aaKnown RBP13.53□□□□□ -0.24
NUP54-216ENST00000514901 RNF11Q9Y3C5 154 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 NAALAD2Q9Y3Q0 740 aa13.53□□□□□ -0.24
NUP54-216ENST00000514901 KMT2BQ9UMN6 2715 aaPredicted RBP13.53□□□□□ -0.24
NUP54-216ENST00000514901 CACNA1GO43497 2377 aa13.52□□□□□ -0.24
NUP54-216ENST00000514901 SGK494L7N484 410 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 FOXE1O00358 373 aaPredicted RBP13.52□□□□□ -0.25
NUP54-216ENST00000514901 TYROBPO43914 113 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 GALR3O60755 368 aaPredicted RBP13.52□□□□□ -0.25
NUP54-216ENST00000514901 TRIM13O60858 407 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 SPAG7O75391 227 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 ITGB2P05107 769 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 ZGLP1P0C6A0 271 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 IL1RNP18510 177 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 PTX3P26022 381 aaPredicted RBP13.52□□□□□ -0.25
NUP54-216ENST00000514901 PKNOX1P55347 436 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 RPS18P62269 152 aaKnown RBP13.52□□□□□ -0.25
NUP54-216ENST00000514901 RHDQ02161 417 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 LCP2Q13094 533 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 TRAF3Q13114 568 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 DEFB134Q4QY38 66 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 LIPMQ5VYY2 423 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 TRIM40Q6P9F5 258 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 EXOC3L1Q86VI1 746 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 RAB43Q86YS6 212 aa13.52□□□□□ -0.25
NUP54-216ENST00000514901 HOMEZQ8IX15 550 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms