RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 IL1RAPQ9NPH3 570 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ZCCHC3Q9NUD5 404 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TAS2R7Q9NYW3 318 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SEC14L4Q9UDX3 406 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 A0A0G2JN53 185 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 A0A1W2PRU2 124 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CLCA1A8K7I4 914 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 C1QTNF3-AMACRE9PGA6 284 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CACNG3O60359 315 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 UPK1BO75841 260 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 FUCA1P04066 466 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SDC1P18827 310 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC14A2Q15849 920 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SMN1Q16637 294 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ATP13A5Q4VNC0 1218 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 BRAT1Q6PJG6 821 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 TSPAN33Q86UF1 283 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ADGRG2Q8IZP9 1017 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SH3RF2Q8TEC5 729 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SCLYQ96I15 445 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 PIP5K1AQ99755 562 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 MED28Q9H204 178 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ZBTB20Q9HC78 741 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ERVK13-1Q9NX77 482 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 TBC1D14Q9P2M4 693 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ABCG2Q9UNQ0 655 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 DLGAP4Q9Y2H0 992 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CMAHPQ9Y471 501 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SMIM30A4D0T7 59 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ARHGEF15O94989 841 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 MPC1LP0DKB6 136 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 TNFRSF1BP20333 461 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 VIPR1P32241 457 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 PPM1AP35813 382 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CRISP3P54108 245 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 KCNC4Q03721 635 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 REEP3Q6NUK4 255 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 MACC1Q6ZN28 852 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 OR8H1Q8NGG4 311 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 NKIRAS2Q9NYR9 191 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 PCDHGA10Q9Y5H3 936 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ADAMTSL1Q8N6G6 1762 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ISM1B1AKI9 464 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC16A5O15375 505 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 TLL1O43897 1013 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CSF2P04141 144 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 JUNBP17275 347 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 LAG3P18627 525 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 TIA1P31483 386 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 STK19P49842 368 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CXCR4P61073 352 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 RBBP4Q09028 425 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 E2F2Q14209 437 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CLEC12AQ5QGZ9 265 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 PNCKQ6P2M8 343 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CCDC3Q9BQI4 270 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 NTMT1Q9BV86 223 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SPATA9Q9BWV2 254 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SLITRK2Q9H156 845 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 MRPS23Q9Y3D9 190 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CARNS1A5YM72 827 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 FXYD1O00168 92 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 OR7A17O14581 309 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 MRPS14O60783 128 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 PRNPP04156 253 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ETFAP13804 333 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 HPGDP15428 266 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF30P17039 623 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 HOXD12P35452 270 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 DGKGP49619 791 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CBLBQ13191 982 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 PTPRRQ15256 657 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 TBRG1Q3YBR2 411 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 MORN1Q5T089 497 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 MANEALQ5VSG8 457 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SYCE2Q6PIF2 218 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 APCDD1Q8J025 514 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 CCDC115Q96NT0 180 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 YIPF4Q9BSR8 244 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 RNF38Q9H0F5 515 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 SMURF1Q9HCE7 757 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 ACOT13Q9NPJ3 140 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 GPSM3Q9Y4H4 160 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 KIF13BQ9NQT8 1826 aa8.11□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM86C2PA6NEL3 165 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PTTG1O95997 202 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PIGAP37287 484 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 CRISP1P54107 249 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 MEF2AQ02078 507 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 WSCD2Q2TBF2 565 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 CLLU1OSQ5K130 101 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PRAMEF14Q5SWL7 426 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PRAMEF13Q5VWM6 474 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM219BQ5XKK7 198 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SERPINA11Q86U17 422 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 IZUMO1Q8IYV9 350 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC22A15Q8IZD6 547 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM86B1Q8N7N1 296 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 KLHDC9Q8NEP7 349 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms