RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 LAPTM4AQ15012 233 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF776Q68DI1 518 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CLIP4Q8N3C7 705 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 FAM46DQ8NEK8 389 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CNIH3Q8TBE1 160 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 MOAP1Q96BY2 351 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC29A1Q99808 456 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 FARSBQ9NSD9 589 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SLCO3A1Q9UIG8 710 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 PCDHB14Q9Y5E9 798 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CFAP20Q9Y6A4 193 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 TRBV23OR9-2A0A075B6M9 112 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC25A12O75746 678 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 HLA-EP13747 358 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 SMSP52788 366 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 IL18Q14116 193 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 SUZ12Q15022 739 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 DDI2Q5TDH0 399 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CST9Q5W186 159 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC39A11Q8N1S5 342 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 COX18Q8N8Q8 333 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 TFAP2CQ92754 450 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC30A3Q99726 388 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 BRF2Q9HAW0 419 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 A0A0G2JN53 185 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 PPP6CO00743 305 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 MUSKO15146 869 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 TCF3P15923 654 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 OXTRP30559 389 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 BNC1Q01954 994 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 TOR1AIP1Q5JTV8 583 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 GORASP2Q9H8Y8 452 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CARS2Q9HA77 564 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 RNF6Q9Y252 685 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 SESN1Q9Y6P5 492 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 ATAD5Q96QE3 1844 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 KLHL33A6NCF5 533 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CLDN4O14493 209 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 PGRMC2O15173 223 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 ACOX3O15254 700 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CD9P21926 228 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 NDUFAF6Q330K2 333 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 BICRALQ6AI39 1079 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 HUS1BQ8NHY5 278 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 RAD9AQ99638 391 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 PIP5K1AQ99755 562 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 TBCCD1Q9NVR7 557 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF701M0R085 212 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 ALG11Q2TAA5 492 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 COLEC12Q5KU26 742 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 LCN1P1Q5VSP4 162 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 TRIM74Q86UV6 250 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CLIP3Q96DZ5 547 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CLSTN3Q9BQT9 956 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CLEC4MQ9H2X3 399 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 EHD1Q9H4M9 534 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 CERS4Q9HA82 394 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 TRIM39Q9HCM9 518 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 TAS2R7Q9NYW3 318 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF221Q9UK13 617 aa10.38□□□□□ -0.75
LIMCH1-205ENST00000503057 E2F3O00716 465 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 SMAD6O43541 496 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 MATN1P21941 496 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ARNTP27540 789 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 RAB25P57735 213 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 GRSF1Q12849 480 aaKnown RBP eCLIP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ANGPT1Q15389 498 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 AFMIDQ63HM1 303 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 NXPE4Q6UWF7 544 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 OAFQ86UD1 273 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 GPR26Q8NDV2 337 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 HSPBAP1Q96EW2 488 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 APIPQ96GX9 242 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 CCNKO75909 580 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 HMGN1P05114 100 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 CSF2RAP15509 400 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 AVPR1BP47901 424 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 MEF2AQ02078 507 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ZSWIM7Q19AV6 140 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 RTL4Q6ZR62 310 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 RNF38Q9H0F5 515 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 RACGAP1Q9H0H5 632 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 IL3P08700 152 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 RPL10P27635 214 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 NUDT6P53370 316 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC7A9P82251 487 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TUBA3EQ6PEY2 450 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 UNC5DQ6UXZ4 953 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TAF8Q7Z7C8 310 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TMEM145Q8NBT3 493 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 IL4I1Q96RQ9 567 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ING3Q9NXR8 418 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 EBF1Q9UH73 591 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 MYO18AQ92614 2054 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 LSM1O15116 133 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF182P17025 639 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ENTPD1P49961 510 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ELAVL3Q14576 367 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 EIF4HQ15056 248 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 DHCR24Q15392 516 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms