RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 CDC40O60508 579 aaKnown RBP eCLIP14.34□□□□□ -0.11
MCF2L-228ENST00000487354 GALR3O60755 368 aaPredicted RBP14.34□□□□□ -0.11
MCF2L-228ENST00000487354 MPC1LP0DKB6 136 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 IL10P22301 178 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 HRH2P25021 359 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 BTG2P78543 158 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 SNX1Q13596 522 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 THEMIS2Q5TEJ8 643 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 KIAA0930Q6ICG6 404 aaPredicted RBP14.34□□□□□ -0.11
MCF2L-228ENST00000487354 TMEM211Q6ICI0 200 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 MBOAT1Q6ZNC8 495 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 PIWIL4Q7Z3Z4 852 aaKnown RBP14.34□□□□□ -0.11
MCF2L-228ENST00000487354 CAMKVQ8NCB2 501 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 APCDD1LQ8NCL9 501 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 RNF214Q8ND24 703 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 TBC1D20Q96BZ9 403 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 KCNJ16Q9NPI9 418 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 CCDC177Q9NQR7 707 aaPredicted RBP14.34□□□□□ -0.11
MCF2L-228ENST00000487354 ZNF223Q9UK11 482 aaPredicted RBP14.34□□□□□ -0.11
MCF2L-228ENST00000487354 ZNF148Q9UQR1 794 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 KLF13Q9Y2Y9 288 aaPredicted RBP14.34□□□□□ -0.11
MCF2L-228ENST00000487354 CAPN6Q9Y6Q1 641 aa14.34□□□□□ -0.11
MCF2L-228ENST00000487354 A0A1B0GTL3 188 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 TCRBV16S1A1N1A0A5B0 115 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 CTAGE15A4D2H0 777 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 CTAG2O75638 210 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 NPY2RP49146 381 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 GPR85P60893 370 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 PMPCAQ10713 525 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 CAPN13Q6MZZ7 669 aaPredicted RBP14.33□□□□□ -0.12
MCF2L-228ENST00000487354 QSOX2Q6ZRP7 698 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 SDCCAG8Q86SQ7 713 aaPredicted RBP14.33□□□□□ -0.12
MCF2L-228ENST00000487354 CTAGE6Q86UF2 777 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 SLC13A5Q86YT5 568 aaPredicted RBP14.33□□□□□ -0.12
MCF2L-228ENST00000487354 MFSD9Q8NBP5 474 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 CD200R1Q8TD46 325 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 SLC13A3Q8WWT9 602 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 FRMD8P1Q9BZ68 369 aaPredicted RBP14.33□□□□□ -0.12
MCF2L-228ENST00000487354 BFARQ9NZS9 450 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 KLHL42Q9P2K6 505 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 ST6GALNAC2Q9UJ37 374 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 ADAMTS6Q9UKP5 1117 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 FAM215AQ9Y5M1 114 aa14.33□□□□□ -0.12
MCF2L-228ENST00000487354 A0A0G2JMM0 328 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 A0A1W2PPB8 328 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 A0A1W2PRS3 328 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 KIR3DP1A8MWS1 328 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 E5RI56 91 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 CHST10O43529 356 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 FAM155BO75949 473 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 PDE9AO76083 593 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 CDH1P12830 882 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 MAOAP21397 527 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 FOLH1Q04609 750 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 MYBPHQ13203 477 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 SKOR2Q2VWA4 1001 aaPredicted RBP14.32□□□□□ -0.12
MCF2L-228ENST00000487354 CES4AQ5XG92 561 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 RTL6Q6ICC9 239 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 ARHGAP11AQ6P4F7 1023 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 LIX1LQ8IVB5 337 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 DENND6AQ8IWF6 608 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 CPNE9Q8IYJ1 553 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.32□□□□□ -0.12
MCF2L-228ENST00000487354 KCNJ9Q92806 393 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 TMEM125Q96AQ2 219 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 PANX2Q96RD6 677 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 SARGQ9BW04 601 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 SGPP1Q9BX95 441 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 SPNS1Q9H2V7 528 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 NECTIN3Q9NQS3 549 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 PNPLA3Q9NST1 481 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 INTS10Q9NVR2 710 aaKnown RBP14.32□□□□□ -0.12
MCF2L-228ENST00000487354 DNAJB12Q9NXW2 375 aaKnown RBP14.32□□□□□ -0.12
MCF2L-228ENST00000487354 CLDN16Q9Y5I7 305 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 LIPGQ9Y5X9 500 aa14.32□□□□□ -0.12
MCF2L-228ENST00000487354 FN1P02751 2386 aaKnown RBP14.32□□□□□ -0.12
MCF2L-228ENST00000487354 C4orf51C9J302 202 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 KLRC4-KLRK1H3BQV0 150 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 PRKNO60260 465 aaPredicted RBP14.31□□□□□ -0.12
MCF2L-228ENST00000487354 PRMT3O60678 531 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 B4GALT2O60909 372 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 ZWINTO95229 277 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 SLC35G6P0C7Q6 338 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 ENO3P13929 434 aaPredicted RBP14.31□□□□□ -0.12
MCF2L-228ENST00000487354 TIAL1Q01085 375 aaKnown RBP eCLIP14.31□□□□□ -0.12
MCF2L-228ENST00000487354 MEF2AQ02078 507 aaPredicted RBP14.31□□□□□ -0.12
MCF2L-228ENST00000487354 HERC3Q15034 1050 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 CEBPEQ15744 281 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 TTLL9Q3SXZ7 439 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 DEFB134Q4QY38 66 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 MEI1Q5TIA1 1274 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 NEPROQ6NW34 567 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 UBE2R2Q712K3 238 aaPredicted RBP14.31□□□□□ -0.12
MCF2L-228ENST00000487354 CYP4Z2PQ8N1L4 340 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 CCDC89Q8N998 374 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 CHDHQ8NE62 594 aaPredicted RBP14.31□□□□□ -0.12
MCF2L-228ENST00000487354 PTCHD1Q96NR3 888 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 GPR21Q99679 349 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 AICDAQ9GZX7 198 aa14.31□□□□□ -0.12
MCF2L-228ENST00000487354 ZDHHC11Q9H8X9 412 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms