RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TAL1P17542 331 aaPredicted RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 RPL17P18621 184 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 OR1D2P34982 312 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 ALDH3B1P43353 468 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 RAB8AP61006 207 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 ERVK-21P61565 698 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 HIST3H2AQ7L7L0 130 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 COMTD1Q86VU5 262 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 NANPQ8TBE9 248 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 GRIN3AQ8TCU5 1115 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 HIST1H2ACQ93077 130 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 MAP6Q96JE9 813 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 RHBGQ9H310 441 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 GAREM1Q9H706 876 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 ASB8Q9H765 288 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 ERVW-1Q9UQF0 538 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 A0A0G2JMP0 313 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 UGT2B10P36537 528 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 SMAD3P84022 425 aaKnown RBP12.88□□□□□ -0.35
USP40-208ENST00000450966 PPP1R3AQ16821 1122 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 BMT2Q1RMZ1 405 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 OR4M2Q8NGB6 313 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 SLC22A17Q8WUG5 538 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 BRI3BPQ8WY22 251 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 S100A16Q96FQ6 103 aaKnown RBP12.88□□□□□ -0.35
USP40-208ENST00000450966 ZNF578Q96N58 590 aaPredicted RBP12.88□□□□□ -0.35
USP40-208ENST00000450966 RAD9AQ99638 391 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 FAM118AQ9NWS6 357 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 PIK3C2AO00443 1686 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 CLDN11O75508 207 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 NUDT6P53370 316 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 HMGN3Q15651 99 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 BCL7AQ4VC05 210 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 RAET1GQ6H3X3 334 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 SLC41A3Q96GZ6 507 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 CHRAC1Q9NRG0 131 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 CBY3A6NI87 242 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 OR7A17O14581 309 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 SHOXO15266 292 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 ATG13O75143 517 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 C2orf80Q0P641 193 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 ATXN7L3Q14CW9 347 aaPredicted RBP12.88□□□□□ -0.35
USP40-208ENST00000450966 SEC23BQ15437 767 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 TOR1AIP1Q5JTV8 583 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 RBFAQ8N0V3 343 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 POGLUT1Q8NBL1 392 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 AKR7LQ8NHP1 331 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 CNIH3Q8TBE1 160 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 OR4K3Q96R72 315 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 HSD17B14Q9BPX1 270 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 NANSQ9NR45 359 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 DZANK1Q9NVP4 752 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 OR6C74A6NCV1 312 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 PIP5K1BO14986 540 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 TBL1XO60907 577 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 SPDEFO95238 335 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 HLA-DQA2P01906 255 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 SYN1P17600 705 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 EPORP19235 508 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 BRCC3P46736 316 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 C9orf57Q5W0N0 161 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 SLC16A9Q7RTY1 509 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 STK35Q8TDR2 534 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 ACDQ96AP0 544 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 CPNE2Q96FN4 548 aaPredicted RBP12.88□□□□□ -0.35
USP40-208ENST00000450966 PIWIL1Q96J94 861 aaKnown RBP12.88□□□□□ -0.35
USP40-208ENST00000450966 ABCD2Q9UBJ2 740 aa12.88□□□□□ -0.35
USP40-208ENST00000450966 EXOSC1Q9Y3B2 195 aaKnown RBP12.88□□□□□ -0.35
USP40-208ENST00000450966 NME6O75414 186 aaPredicted RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 SC5DO75845 299 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ALPPL2P10696 532 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 JAM2P57087 298 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PIGFQ07326 219 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 CTBP1Q13363 440 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PLEKHN1Q494U1 663 aaPredicted RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 MBLAC2Q68D91 279 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TFAP2CQ92754 450 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 SLC27A6Q9Y2P4 619 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 MAFBQ9Y5Q3 323 aaPredicted RBP12.87□□□□□ -0.35
USP40-208ENST00000450966 DAPL1A0PJW8 107 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TMEM150BA6NC51 233 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 LRRC72A6NJI9 287 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 RIIAD1A6NNX1 92 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 RETP07949 1114 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 UBL4AP11441 157 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 SMPD1P17405 629 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ITGB5P18084 799 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 CAPN3P20807 821 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 TTPAP49638 278 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 S100A10P60903 97 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ST3GAL4Q11206 333 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 IRF5Q13568 498 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 CPTPQ5TA50 214 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ZNF730Q6ZMV8 503 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 PARP16Q8N5Y8 322 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 CHST4Q8NCG5 386 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 MGLLQ99685 303 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 LGR4Q9BXB1 951 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 ZIM2Q9NZV7 527 aa12.87□□□□□ -0.35
USP40-208ENST00000450966 NDRG3Q9UGV2 375 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms