RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TDGF1P3P51864 188 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 SLC12A2P55011 1212 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 CDKN2DP55273 166 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 ARL4CP56559 192 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 OR4D2P58180 307 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 STXBP1P61764 594 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 MAT1AQ00266 395 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 ALDH6A1Q02252 535 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 OC90Q02509 493 aaPredicted RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 SRSF11Q05519 484 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 RCN2Q14257 317 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 SFT2D3Q587I9 215 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 TEDDM1Q5T9Z0 273 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 HECTD2Q5U5R9 776 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 C1QL3Q5VWW1 255 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 ZNF787Q6DD87 383 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 HIST2H2BCQ6DN03 193 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 PAPD4Q6PIY7 484 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 BNC2Q6ZN30 1099 aaPredicted RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 QSOX2Q6ZRP7 698 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 RPS19BP1Q86WX3 136 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 TCAIMQ8N3R3 496 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 AFAP1L2Q8N4X5 818 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 POGLUT1Q8NBL1 392 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 BBOF1Q8ND07 529 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 NT5CQ8TCD5 201 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 ADAMTS18Q8TE60 1221 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 SLC5A11Q8WWX8 675 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 ANP32BQ92688 251 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 PEX11GQ96HA9 241 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 MAGED4Q96JG8 741 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 FAR2Q96K12 515 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 TAAR6Q96RI8 345 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 NDNQ99608 321 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 NPLQ9BXD5 320 aaPredicted RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 CNOT10Q9H9A5 744 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 PELI2Q9HAT8 420 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 POPDC3Q9HBV1 291 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 GPAMQ9HCL2 828 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 HCN3Q9P1Z3 774 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 MRPS33Q9Y291 106 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 NBPF19A0A087WUL8 3843 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 NOTCH2Q04721 2471 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 CROCCQ5TZA2 2017 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 KLRC4-KLRK1H3BQV0 150 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 CHST10O43529 356 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 SLC19A2O60779 497 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 RDH16O75452 317 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 TSPAN12O95859 305 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 SP1P08047 785 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 SERPINA6P08185 405 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 COL8A1P27658 744 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 GABRB3P28472 473 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 CD96P40200 585 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 ELK3P41970 407 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 SCTRP47872 440 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 CYB561P49447 251 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 KCNK10P57789 538 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 SLC26A5P58743 744 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 TIAL1Q01085 375 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS41-208ENST00000448833 DR1Q01658 176 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 RHAGQ02094 409 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 TGM3Q08188 693 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 MGAT5Q09328 741 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 TUBA3CQ13748 450 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 USP10Q14694 798 aaKnown RBP6.65□□□□□ -1.34
VPS41-208ENST00000448833 TERF2Q15554 542 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 OR1C1Q15619 314 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 PHKG1Q16816 387 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 DEFB134Q4QY38 66 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 CDKL4Q5MAI5 379 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 SLC25A25Q6KCM7 469 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 TUBA3EQ6PEY2 450 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 LANCL3Q6ZV70 420 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 FRA10AC1Q70Z53 315 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 MRGPRGQ86SM5 289 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 ADAMTSL2Q86TH1 951 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 THOC6Q86W42 341 aaKnown RBP6.65□□□□□ -1.34
VPS41-208ENST00000448833 CRLF3Q8IUI8 442 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 BEST3Q8N1M1 668 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 KRT78Q8N1N4 520 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 AGGF1Q8N302 714 aaeCLIP6.65□□□□□ -1.343e-7■■■□□ 16.4
VPS41-208ENST00000448833 SLC35F6Q8N357 371 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 ZNF740Q8NDX6 193 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 MDS2Q8NDY4 140 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 ZCCHC10Q8TBK6 192 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 CDKL2Q92772 493 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 NEIL2Q969S2 332 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 TSPAN17Q96FV3 270 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 SCMH1Q96GD3 660 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 PTCHD1Q96NR3 888 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 OLFM1Q99784 485 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 EGFL8Q99944 293 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 MACROD1Q9BQ69 325 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 MESP1Q9BRJ9 268 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 DDX47Q9H0S4 455 aaKnown RBP6.65□□□□□ -1.34
VPS41-208ENST00000448833 SYNPO2LQ9H987 977 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 PRDM9Q9NQV7 894 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 LANCL2Q9NS86 450 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 LRFN1Q9P244 771 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms