RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CLIP3Q96DZ5 547 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 MVB12AQ96EY5 273 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 ATP6V1G3Q96LB4 118 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 QRFPRQ96P65 431 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 RUFY1Q96T51 708 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 DPH2Q9BQC3 489 aaPredicted RBP11.8□□□□□ -0.52
USP40-205ENST00000430158 MS4A8Q9BY19 250 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 STMN4Q9H169 189 aaPredicted RBP11.8□□□□□ -0.52
USP40-205ENST00000430158 ACTR8Q9H981 624 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 PSD3Q9NYI0 1048 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 IL17BQ9UHF5 180 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 MID2Q9UJV3 735 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 PPT2Q9UMR5 302 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 PCDHGA6Q9Y5G7 932 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 IGLV3-12A0A075B6K2 115 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 TMEM120BA0PK00 339 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 NDUFS4O43181 175 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 DNAJB6O75190 326 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 OR4F21O95013 312 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 ESRRBO95718 433 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 OTCP00480 354 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 PIK3CBP42338 1070 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 OR1D4P47884 311 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 PKNOX1P55347 436 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 NAA20P61599 178 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 DCDP81605 110 aaKnown RBP11.79□□□□□ -0.52
USP40-205ENST00000430158 TLE3Q04726 772 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 ZRSR2Q15696 482 aaKnown RBP11.79□□□□□ -0.52
USP40-205ENST00000430158 CPSF6Q16630 551 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP40-205ENST00000430158 HIST2H2ACQ16777 129 aaPredicted RBP11.79□□□□□ -0.52
USP40-205ENST00000430158 NKAIN1Q4KMZ8 207 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 HIST2H2AA3Q6FI13 130 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 MILR1Q7Z6M3 343 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 VASH2Q86V25 355 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 RNF175Q8N4F7 328 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 TBC1D19Q8N5T2 526 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 CCNYL1Q8N7R7 359 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 HUS1BQ8NHY5 278 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 UBE2E3Q969T4 207 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 NAF1Q96HR8 494 aaKnown RBP11.79□□□□□ -0.52
USP40-205ENST00000430158 IQCGQ9H095 443 aaKnown RBP11.79□□□□□ -0.52
USP40-205ENST00000430158 SLC26A1Q9H2B4 701 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 TRPS1Q9UHF7 1281 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 CROTQ9UKG9 612 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 ZMIZ1Q9ULJ6 1067 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 PCDHGA11Q9Y5H2 935 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 PCDHGA10Q9Y5H3 936 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 DOCK10Q96BY6 2186 aa11.79□□□□□ -0.52
USP40-205ENST00000430158 PCSK5Q92824 1860 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 A0A0A6YYC8 382 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 VSTM2BA6NLU5 285 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 SRRM3A6NNA2 597 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 C21orf140B9A014 251 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 I3L1I5 382 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 FOXE1O00358 373 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 BIRC5O15392 142 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 NPHS1O60500 1241 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 GALR3O60755 368 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 KLF7O75840 302 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 ZWINTO95229 277 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 NSA2O95478 260 aaKnown RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 ETHE1O95571 254 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 MLYCDO95822 493 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 B3GALT4O96024 378 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 KLK3P07288 261 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 RAB40ALP0C0E4 278 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 SLC35G6P0C7Q6 338 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 LIFP15018 202 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 ALAS2P22557 587 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 ITPKBP27987 946 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 SERPINB1P30740 379 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 NEK2P51955 445 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 FOXA1P55317 472 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 DNASE1L3Q13609 305 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 DEPDC1Q5TB30 811 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 PRMT9Q6P2P2 845 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 GPRIN3Q6ZVF9 776 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 OVCH1Q7RTY7 1134 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 CCDC63Q8NA47 563 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 OR9A4Q8NGU2 314 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 PPP4R1Q8TF05 950 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 MR1Q95460 341 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 FKBP10Q96AY3 582 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 CNDP1Q96KN2 507 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 PKNOX2Q96KN3 472 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 F2RL3Q96RI0 385 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 ZNF717Q9BY31 904 aaPredicted RBP11.78□□□□□ -0.52
USP40-205ENST00000430158 NLNQ9BYT8 704 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 FAM117AQ9C073 453 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 DRC3Q9H069 523 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 KCNK9Q9NPC2 374 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 DMRT3Q9NQL9 472 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 PRDM7Q9NQW5 492 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 IRAK4Q9NWZ3 460 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 ADGRE2Q9UHX3 823 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 ATRXP46100 2492 aa11.78□□□□□ -0.52
USP40-205ENST00000430158 TLN1Q9Y490 2541 aaKnown RBP11.77□□□□□ -0.53
USP40-205ENST00000430158 SERTM1A2A2V5 107 aa11.77□□□□□ -0.53
USP40-205ENST00000430158 ANKDD1BA6NHY2 528 aa11.77□□□□□ -0.53
USP40-205ENST00000430158 GOLGA6L10A6NI86 522 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms