RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PSAT1Q9Y617 370 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 SLC22A7Q9Y694 548 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 CSMD1Q96PZ7 3565 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 A0A0G2JN53 185 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 GOLGA6L10A0A0M3HER8 536 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 TRBC2A0A5B9 178 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 PABPN1LA6NDY0 278 aaKnown RBP10.86□□□□□ -0.67
USP4-204ENST00000416417 NPEPPSL1A6NEC2 478 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 MAGEB17A8MXT2 336 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 NDC80O14777 642 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 PIAS1O75925 651 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 ALOX12P18054 663 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 CCND1P24385 295 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 IVDP26440 423 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 HTR1EP28566 365 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 ALDH6A1Q02252 535 aaKnown RBP10.86□□□□□ -0.67
USP4-204ENST00000416417 CSHL1Q14406 222 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 HERC3Q15034 1050 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 RBBP5Q15291 538 aaKnown RBP10.86□□□□□ -0.67
USP4-204ENST00000416417 EXT1Q16394 746 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 RNFT1Q5M7Z0 435 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 CNTN4Q8IWV2 1026 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 KLHL7Q8IXQ5 586 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 UTP15Q8TED0 518 aaKnown RBP10.86□□□□□ -0.67
USP4-204ENST00000416417 TBC1D20Q96BZ9 403 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 SCMH1Q96GD3 660 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 CAPZA3Q96KX2 299 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 PTCHD1Q96NR3 888 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 LPAR4Q99677 370 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 TRIM51Q9BSJ1 452 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 AICDAQ9GZX7 198 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 NECTIN3Q9NQS3 549 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 VWA7Q9Y334 891 aa10.86□□□□□ -0.67
USP4-204ENST00000416417 CREBBPQ92793 2442 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 C19orf84I3L1E1 186 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 NEURL1O76050 574 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 TTC4O95801 387 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 SP1P08047 785 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 TPP2P29144 1249 aaPredicted RBP10.85□□□□□ -0.67
USP4-204ENST00000416417 EEF1DP29692 281 aaKnown RBP10.85□□□□□ -0.67
USP4-204ENST00000416417 RFC3P40938 356 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 SCTRP47872 440 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 RBPJQ06330 500 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 ART3Q13508 389 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 NAA30Q147X3 362 aaPredicted RBP10.85□□□□□ -0.67
USP4-204ENST00000416417 MAPKAPK3Q16644 382 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 TOR1AIP1Q5JTV8 583 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 SBSNQ6UWP8 590 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 TMPRSS11BQ86T26 416 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 THOC6Q86W42 341 aaKnown RBP10.85□□□□□ -0.67
USP4-204ENST00000416417 SLC5A8Q8N695 610 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 NT5CQ8TCD5 201 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 THAP3Q8WTV1 239 aaPredicted RBP10.85□□□□□ -0.67
USP4-204ENST00000416417 SLC5A11Q8WWX8 675 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 MAGED4Q96JG8 741 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 GPR137Q96N19 417 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 FRMD6Q96NE9 622 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 OR1F2PQ96R84 312 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 TRIM31Q9BZY9 425 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 LRFN1Q9P244 771 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 SLC22A14Q9Y267 594 aa10.85□□□□□ -0.67
USP4-204ENST00000416417 SCN2AQ99250 2005 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 MYOCOSA0A1B0GUC4 107 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 CYC1P08574 325 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 MYBL2P10244 700 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 ESRRAP11474 423 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 CD46P15529 392 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 PPP2R1BP30154 601 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 GDF5P43026 501 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 AP1S2P56377 157 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 MRPS25P82663 173 aaKnown RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 REEP5Q00765 189 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 RGS1Q08116 209 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 PWP1Q13610 501 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 FASTKD3Q14CZ7 662 aaKnown RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 PPP1R3AQ16821 1122 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 FBXO48Q5FWF7 155 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 SLC25A25Q6KCM7 469 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 FAM45BPQ6NSW5 357 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 BNC2Q6ZN30 1099 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 CAPN12Q6ZSI9 719 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 KIAA0408Q6ZU52 694 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 PCGF5Q86SE9 256 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 RPS19BP1Q86WX3 136 aaKnown RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 ZNF227Q86WZ6 799 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 ZNF808Q8N4W9 903 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 CPSF7Q8N684 471 aaKnown RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 FAM45AQ8TCE6 357 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 ELP5Q8TE02 316 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 ADAMTS18Q8TE60 1221 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 ANKRD49Q8WVL7 239 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 TRIM54Q9BYV2 358 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 ZFP69BQ9UJL9 534 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 DYRK1BQ9Y463 629 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 APCP25054 2843 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 MYO7BQ6PIF6 2116 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 NCF1BA6NI72 391 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 NCF1CA8MVU1 366 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 PRMT3O60678 531 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 SLC25A12O75746 678 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms