RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 HSPA4LO95757 839 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 PENKP01210 267 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 IGHV2-70P01814 119 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 FGF5P12034 268 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ERCC2P18074 760 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ITGB6P18564 788 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 MUTP22033 750 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 MARCKSP29966 332 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 MAT1AQ00266 395 aaKnown RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 LGALS3BPQ08380 585 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 PPP2R5CQ13362 524 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 STXBP2Q15833 593 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 UGP2Q16851 508 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 HYAL4Q2M3T9 481 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 KLHL22Q53GT1 634 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 SPDYCQ5MJ68 293 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 PRR27Q6MZM9 219 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 PPP1R21Q6ZMI0 780 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 MEX3BQ6ZN04 569 aaKnown RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 DET1Q7L5Y6 550 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 CCDC186Q7Z3E2 898 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ZNF554Q86TJ5 538 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 PLA2G4DQ86XP0 818 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 PPFIBP2Q8ND30 876 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 OR11H4Q8NGC9 324 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ATL1Q8WXF7 558 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 HSD17B8Q92506 261 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 SYAP1Q96A49 352 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 SIPA1Q96FS4 1042 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 SENP5Q96HI0 755 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 RHNO1Q9BSD3 238 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ANP32EQ9BTT0 268 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 CCSER1Q9C0I3 900 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 DDX19AQ9NUU7 478 aaKnown RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ZNF701Q9NV72 531 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ANAPC5Q9UJX4 755 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 CPSF3Q9UKF6 684 aaKnown RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 TMED3Q9Y3Q3 217 aa4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 DDX49Q9Y6V7 483 aaKnown RBP4.54□□□□□ -1.68
HMGB3P19-201ENST00000403971 ASTN1O14525 1302 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 MSH4O15457 936 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 UMODP07911 640 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 HAPLN1P10915 354 aaPredicted RBP4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 HSPA8P11142 646 aaKnown RBP4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 PAX1P15863 534 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 PTAFRP25105 342 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 SLC6A6P31641 620 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 SFNP31947 248 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 PDX1P52945 283 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 PRMT2P55345 433 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 C1QTNF8P60827 252 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 PHEXP78562 749 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 CNTN2Q02246 1040 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 SP3Q02447 781 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 MAP2K1Q02750 393 aaPredicted RBP4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 MZT1Q08AG7 82 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 PSMD6Q15008 389 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 IL17AQ16552 155 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 CA9Q16790 459 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 ZC2HC1CQ53FD0 456 aaPredicted RBP4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 SPECC1Q5M775 1068 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 ELFN2Q5R3F8 820 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 CCNYL2Q5T2Q4 361 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 IL27RAQ6UWB1 636 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 CCDC73Q6ZRK6 1079 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 VSIG1Q86XK7 387 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 MFN1Q8IWA4 741 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 STPG4Q8N801 248 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 ERMNQ8TAM6 284 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 ROBO4Q8WZ75 1007 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 TM9SF4Q92544 642 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 SPSB1Q96BD6 273 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 DHX58Q96C10 678 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 FEVQ99581 238 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 ZNF577Q9BSK1 485 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 SLC25A23Q9BV35 468 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 TEKT3Q9BXF9 490 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 CUEDC2Q9H467 287 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 CHCHD3Q9NX63 227 aaKnown RBP4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 RNF186Q9NXI6 227 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 COQ3Q9NZJ6 369 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 LIPGQ9Y5X9 500 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 SCN10AQ9Y5Y9 1956 aa4.53□□□□□ -1.68
HMGB3P19-201ENST00000403971 A0A1B0GVL5 298 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 CTAGE5O15320 804 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 KINO60870 393 aaKnown RBP4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 RECQL5O94762 991 aaPredicted RBP4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 LETM1O95202 739 aaPredicted RBP4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 PGK2P07205 417 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 IGHV4-38-2P0DP08 117 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 RPA1P27694 616 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 HOXD10P28358 340 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 MNDAP41218 407 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 SYKP43405 635 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 LHX1P48742 406 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 NPY4RP50391 375 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 NDUFA8P51970 172 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 PRKCZQ05513 592 aa4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 PPIGQ13427 754 aaKnown RBP eCLIP4.52□□□□□ -1.69
HMGB3P19-201ENST00000403971 ITPRIPL2Q3MIP1 535 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms