RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TCRBV3S1A0A5B6 114 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 PCNX2A6NKB5 2137 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 RGS14O43566 566 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 SMNDC1O75940 238 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS53-202ENST00000389040 WDR47O94967 919 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 G6PDP11413 515 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 HSD17B1P14061 328 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 JUPP14923 745 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 PKLRP30613 574 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 GGT5P36269 586 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 PRKG2Q13237 762 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 NFYCQ13952 458 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 ISXQ2M1V0 245 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 AP5B1Q2VPB7 878 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 AMZ1Q400G9 498 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 TIGD2Q4W5G0 525 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 IL23RQ5VWK5 629 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 CYP2R1Q6VVX0 501 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 PRSS42Q7Z5A4 293 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 SLC15A3Q8IY34 581 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 ICA1LQ8NDH6 482 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 CATSPER1Q8NEC5 780 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 PROKR1Q8TCW9 393 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 GATA6Q92908 595 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 DUS3LQ96G46 650 aaKnown RBP9.78□□□□□ -0.84
VPS53-202ENST00000389040 LIN37Q96GY3 246 aaPredicted RBP9.78□□□□□ -0.84
VPS53-202ENST00000389040 PPP3R2Q96LZ3 170 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 PKP2Q99959 881 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 CMTM6Q9NX76 183 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 TDRKHQ9Y2W6 561 aaKnown RBP9.78□□□□□ -0.84
VPS53-202ENST00000389040 RNF11Q9Y3C5 154 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 AP4S1Q9Y587 144 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 TP53BP1Q12888 1972 aaPredicted RBP9.77□□□□□ -0.85
VPS53-202ENST00000389040 PIPSLA2A3N6 862 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 DYTNA2CJ06 578 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 MAGEA13PA6NCF6 341 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 OR6C74A6NCV1 312 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 TLCD2A6NGC4 264 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 ARHGEF33A8MVX0 844 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 SLC28A1O00337 649 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 FFAR3O14843 346 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 GPR42O15529 346 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 DNAJA2O60884 412 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 ULK1O75385 1050 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 MSL3P1P0C860 447 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 UQCRBP14927 111 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 IL12AP29459 219 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 SHC2P98077 582 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 FOXK2Q01167 660 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 BNIP2Q12982 314 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 RFTN2Q52LD8 501 aaPredicted RBP9.77□□□□□ -0.85
VPS53-202ENST00000389040 PAGE3Q5JUK9 113 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 HES3Q5TGS1 186 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 DUS1LQ6P1R4 473 aaKnown RBP9.77□□□□□ -0.85
VPS53-202ENST00000389040 TMEM154Q6P9G4 183 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 CYP20A1Q6UW02 462 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 LRRC70Q7Z2Q7 622 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 BPHLQ86WA6 291 aaPredicted RBP9.77□□□□□ -0.85
VPS53-202ENST00000389040 ZFAND4Q86XD8 727 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 SLITRK4Q8IW52 837 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 ADGRF3Q8IZF5 1079 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 ADCY4Q8NFM4 1077 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 SMPDL3AQ92484 453 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 BTBD9Q96Q07 612 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 CMKLR1Q99788 373 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 SLC29A3Q9BZD2 475 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 TRIM15Q9C019 465 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 C1GALT1Q9NS00 363 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 GMPR2Q9P2T1 348 aaKnown RBP9.77□□□□□ -0.85
VPS53-202ENST00000389040 SCOCQ9UIL1 159 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 ICKQ9UPZ9 632 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 CCL27Q9Y4X3 112 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 NEUROG3Q9Y4Z2 214 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 POLR3HQ9Y535 204 aaPredicted RBP9.77□□□□□ -0.85
VPS53-202ENST00000389040 PCDHA9Q9Y5H5 950 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 KLK4Q9Y5K2 254 aa9.77□□□□□ -0.85
VPS53-202ENST00000389040 MANBAO00462 879 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 CAPN5O15484 640 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 CLDN9O95484 217 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 CAPNS1P04632 268 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ADRB1P08588 477 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 CHRM5P08912 532 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 ATP6V1B2P21281 511 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 JAK1P23458 1154 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 HRH2P25021 359 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 SLC7A1P30825 629 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 CASP2P42575 452 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 RPL38P63173 70 aaKnown RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 TLR1Q15399 786 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 SLC5A12Q1EHB4 618 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 SMU1Q2TAY7 513 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 IGF2-ASQ6U949 168 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 USP53Q70EK8 1073 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 TRIM46Q7Z4K8 759 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ARHGAP22Q7Z5H3 698 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 TICAM1Q8IUC6 712 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 TMEM102Q8N9M5 508 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 ZUFSPQ96AP4 578 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 TMEM125Q96AQ2 219 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 SLCO4A1Q96BD0 722 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms