RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KCNJ1P48048 391 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PPP5CP53041 499 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 F2RL1P55085 397 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 RPL38P63173 70 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CXADRP78310 365 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CDK18Q07002 472 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TXNRD1Q16881 649 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF630Q2M218 657 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CES3Q6UWW8 571 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ANKRD46Q86W74 232 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 AADATQ8N5Z0 425 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ACBD4Q8NC06 268 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PIGXQ8TBF5 258 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 HNRNPLLQ8WVV9 542 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SHC3Q92529 594 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TRMT61BQ9BVS5 477 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 UNKLQ9H9P5 680 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ANKHQ9HCJ1 492 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CTPS2Q9NRF8 586 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CCM2LQ9NUG4 571 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 C2orf42Q9NWW7 574 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ACTR3BQ9P1U1 418 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PRORSD1PA6NEY8 169 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SUV39H1O43463 412 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 KDELR3O43731 214 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SDC3O75056 442 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC6A6P31641 620 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 HSD17B7P56937 341 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 FXYD4P59646 89 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GNA12Q03113 381 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PTCHD3Q3KNS1 767 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 AVPI1Q5T686 147 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 OR5M10Q6IEU7 315 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TRMT10BQ6PF06 316 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SEZ6L2Q6UXD5 910 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ABHD13Q7L211 337 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 STK40Q8N2I9 435 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CLEC1AQ8NC01 280 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 OR4A4PQ8NGN8 299 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 OR4K15Q8NH41 348 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 UHRF1Q96T88 793 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PCDHB18PQ96TA0 734 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 C9orf16Q9BUW7 83 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 COA1Q9GZY4 146 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SEMA4AQ9H3S1 761 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 LRRN3Q9H3W5 708 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 UBTD1Q9HAC8 227 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 NMRAL1Q9HBL8 299 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GPATCH2LQ9NWQ4 482 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 DEC1Q9P2X7 70 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TCFL5Q9UL49 500 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ACOT9Q9Y305 439 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SPO11Q9Y5K1 396 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CACNA1IQ9P0X4 2223 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GCC2Q8IWJ2 1684 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TRAFD1O14545 582 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 DEDDO75618 318 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SYPP08247 313 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GLB1P16278 677 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SREBF1P36956 1147 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GRIA2P42262 883 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 MMP15P51511 669 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CLCN2P51788 898 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 NKX6-1P78426 367 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 IKZF1Q13422 519 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GRM7Q14831 915 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC36A3Q495N2 470 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 FBXO16Q8IX29 292 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 KBTBD8Q8NFY9 601 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ELP5Q8TE02 316 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 NANOS1Q8WY41 292 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC47A1Q96FL8 570 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ZBED3Q96IU2 234 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 DEFB118Q96PH6 123 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ORAI2Q96SN7 254 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TRPS1Q9UHF7 1281 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC27A5Q9Y2P5 690 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 KCTD3Q9Y597 815 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 MAFBQ9Y5Q3 323 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 FAM205AQ6ZU69 1335 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 A0A1W2PPH5 198 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GRXCR1A8MXD5 290 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PAPSS1O43252 624 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 HCRTR2O43614 444 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 S100A8P05109 93 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A6P0DMU7 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A5P0DMU8 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A7P0DMV0 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A8P0DMV1 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A9P0DMV2 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GABRR1P24046 479 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 AZGP1P25311 298 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 HOXA11P31270 313 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CD151P48509 253 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 C1QTNF8P60827 252 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SEMG2Q02383 582 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ADAM15Q13444 863 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A2Q5DJT8 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A1Q5HYN5 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM201Q5SNT2 666 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms