RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CEPT1Q9Y6K0 416 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 C10orf71Q711Q0 1435 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 NFKBIEO00221 500 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 EEDO75530 441 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 APOC3P02656 99 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CSNK2A2P19784 350 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 TCEA1P23193 301 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 MPIP34949 423 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 LEPRP48357 1165 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 FAM76BQ5HYJ3 339 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 UBE2UQ5VVX9 321 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 ZCCHC12Q6PEW1 402 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 NPLQ9BXD5 320 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 MAF1Q9H063 256 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 LYARQ9NX58 379 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 MEMO1Q9Y316 297 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 PCDHGA7Q9Y5G6 932 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 RPP14O95059 124 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 JUNP05412 331 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 STEAP4Q687X5 459 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 HAGHLQ6PII5 290 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 FAM129CQ86XR2 697 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 RGL4Q8IZJ4 473 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 KRTCAP2Q8N6L1 136 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 DPCDQ9BVM2 203 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 NOP16Q9Y3C1 178 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 PROM1O43490 865 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 CD1DP15813 335 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 ATAT1Q5SQI0 421 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 C22orf42Q6IC83 251 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TICAM1Q8IUC6 712 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF486Q96H40 463 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 MCCC1Q96RQ3 725 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 CD244Q9BZW8 370 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 XYLT2Q9H1B5 865 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 NANSQ9NR45 359 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 NARSO43776 548 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 CNTN5O94779 1100 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 RASGRP1O95267 797 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 C6orf47O95873 294 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TFAP2AP05549 437 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TACSTD2P09758 323 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 MAP3K8P41279 467 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 STXBP1P61764 594 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 GRIK2Q13002 908 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 SAMD14Q8IZD0 417 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 KDM1BQ8NB78 822 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 PPIL3Q9H2H8 161 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 C14orf105Q9NVL8 296 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 FBXO9Q9UK97 447 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 MYH6P13533 1939 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3DA0A087WVF3 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3IA0A087WXS9 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3EA0A087X179 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3KA0A087X1G2 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3FA6NER0 549 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3LB9A6J9 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 M0R036 132 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3HP0C7X1 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 ST3GAL3Q11203 375 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 EFR3AQ14156 821 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 UAP1L1Q3KQV9 507 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3GQ6DHY5 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3CQ6IPX1 549 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 FUT10Q6P4F1 479 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 TBC1D3Q8IZP1 549 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 PCBD2Q9H0N5 130 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 ARMC1Q9NVT9 282 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 CYTH4Q9UIA0 394 aa18.9■□□□□ 0.62
CCDC88B-202ENST00000356786 LRRN3E7EW58 273 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 KRT33AO76009 404 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 PRNPP04156 253 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 AHCYP23526 432 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 CD40LGP29965 261 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 SLC5A2P31639 672 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 TAS2R50P59544 299 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 GPR68Q15743 365 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 USF2Q15853 346 aaPredicted RBP18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 RPLP0P6Q8NHW5 317 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 PLD4Q96BZ4 506 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 LRRN3Q9H3W5 708 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 MKKSQ9NPJ1 570 aaPredicted RBP18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 TAS2R3Q9NYW6 316 aa18.89■□□□□ 0.62
CCDC88B-202ENST00000356786 MYH7BA7E2Y1 1941 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 SYN3O14994 580 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 EEF1E1O43324 174 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 RCBTB2O95199 551 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 EPCAMP16422 314 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 AKT2P31751 481 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 ENPP6Q6UWR7 440 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 THOC6Q86W42 341 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 RNF130Q86XS8 419 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 OR2AG1Q9H205 316 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 POPDC3Q9HBV1 291 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 SLC39A1Q9NY26 324 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 NLKQ9UBE8 527 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 ZFR2Q9UPR6 939 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 LOC100509620A0A075B734 347 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 A0A096LPI6 279 aa18.89■□□□□ 0.61
CCDC88B-202ENST00000356786 PGAM2P15259 253 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms