RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 APOBEC3BQ9UH17 382 aaKnown RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 C15orf38-AP3S2A0A0A6YYH1 394 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 TRBC2A0A5B9 178 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 PRAMEF10O60809 474 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 ERN1O75460 977 aaKnown RBP17.59■□□□□ 0.41
USP39-201ENST00000323701 IL3P08700 152 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 PEX2P28328 305 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 CD38P28907 300 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 VHLP40337 213 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 ASMTP46597 345 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 PHEXP78562 749 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 TAF11Q15544 211 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 CPTPQ5TA50 214 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 LCN8Q6JVE9 175 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 PRR23BQ6ZRT6 265 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 ARPINQ7Z6K5 226 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 OR10G6Q8NH81 332 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 CIDECQ96AQ7 238 aaPredicted RBP17.59■□□□□ 0.41
USP39-201ENST00000323701 COQ8BQ96D53 544 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 OR2A14Q96R47 310 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 TBCDQ9BTW9 1192 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 KLHL25Q9H0H3 589 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 SH3BP4Q9P0V3 963 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 BDP1A6H8Y1 2624 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 OR6C74A6NCV1 312 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 LRIT2A6NDA9 550 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 NDUFS4O43181 175 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 FURINP09958 794 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 CTSEP14091 401 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 NUDT1P36639 197 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 RPS9P46781 194 aaKnown RBP17.59■□□□□ 0.41
USP39-201ENST00000323701 PLA2G16P53816 162 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 PPP1CAP62136 330 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 BNIP2Q12982 314 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 DUOXA1Q1HG43 343 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 DPY19L1Q2PZI1 675 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 TRIM48Q8IWZ4 208 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 UBALD2Q8IYN6 164 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 PQLC1Q8N2U9 271 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 MFSD2AQ8NA29 543 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 CADM4Q8NFZ8 388 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 UCN3Q969E3 161 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 TEFMQ96QE5 360 aaKnown RBP17.59■□□□□ 0.41
USP39-201ENST00000323701 PANX1Q96RD7 426 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 ECSITQ9BQ95 431 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 KAT8Q9H7Z6 458 aaKnown RBP17.59■□□□□ 0.41
USP39-201ENST00000323701 RMND5AQ9H871 391 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 TM9SF3Q9HD45 589 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 TMEM184CQ9NVA4 438 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 RIMS3Q9UJD0 308 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 LRRC42Q9Y546 428 aa17.59■□□□□ 0.41
USP39-201ENST00000323701 CEP192Q8TEP8 1941 aa17.58■□□□□ 0.41
USP39-201ENST00000323701 TMPRSS11DO60235 418 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 CPSF4O95639 269 aaKnown RBP17.58■□□□□ 0.4
USP39-201ENST00000323701 VIPP01282 170 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 HTR1EP28566 365 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 CXCL12P48061 93 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 GZMMP51124 257 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 ABATP80404 500 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 C2orf80Q0P641 193 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 CCNYL2Q5T2Q4 361 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 ZNF438Q7Z4V0 828 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 CAMKMTQ7Z624 323 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 GJD3Q8N144 294 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 TMEM132CQ8N3T6 1108 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 CAMKK1Q8N5S9 505 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 FAM46DQ8NEK8 389 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 ZUFSPQ96AP4 578 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 PITHD1Q9GZP4 211 aaPredicted RBP17.58■□□□□ 0.4
USP39-201ENST00000323701 REEP4Q9H6H4 257 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 MYNNQ9NPC7 610 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 BCAP29Q9UHQ4 241 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 ADGRE2Q9UHX3 823 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 SNX13Q9Y5W8 968 aa17.58■□□□□ 0.4
USP39-201ENST00000323701 TCRBV5S2A0A599 114 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 UGT2B7P16662 529 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 MAGP20916 626 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 CMPK1P30085 196 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 LSSP48449 732 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 PDE7AQ13946 482 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 ZIC1Q15915 447 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 SPATS1Q496A3 300 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 ZNF793Q6ZN11 406 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 ZNF548Q8NEK5 533 aaPredicted RBP17.57■□□□□ 0.4
USP39-201ENST00000323701 NELL1Q92832 810 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 NAF1Q96HR8 494 aaKnown RBP17.57■□□□□ 0.4
USP39-201ENST00000323701 LRGUKQ96M69 825 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 C17orf62Q9BQA9 187 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 EVA1BQ9NVM1 165 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 FAM120CQ9NX05 1096 aaKnown RBP17.57■□□□□ 0.4
USP39-201ENST00000323701 ATP6V1HQ9UI12 483 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 B4DGG1 531 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 TLR4O00206 839 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 NVLO15381 856 aaKnown RBP17.57■□□□□ 0.4
USP39-201ENST00000323701 CLEC3AO75596 197 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 SEMA3DO95025 777 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 HPCAL1P37235 193 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 GAB1Q13480 694 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 ZFP1Q6P2D0 407 aa17.57■□□□□ 0.4
USP39-201ENST00000323701 MSANTD1Q6ZTZ1 278 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms