RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 C2CD4BA6NLJ0 364 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 PRKYO43930 277 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 RFPL2O75678 378 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 CD97P48960 835 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 BCL2A1Q16548 175 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SGCBQ16585 318 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 AKR1C8PQ5T2L2 129 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SLC6A7Q99884 636 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 RASAL1O95294 804 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SLBPQ14493 270 aaKnown RBP eCLIP13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ECM1Q16610 540 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 NKAPLQ5M9Q1 402 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 UGT2A3Q6UWM9 527 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SLC29A4Q7RTT9 530 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 OR4K3Q96R72 315 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 YIPF4Q9BSR8 244 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF225Q9UK10 706 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 MYO5BQ9ULV0 1848 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 EPHX1P07099 455 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 CD52P31358 61 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 TAS2R50P59544 299 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 TLE3Q04726 772 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ZSWIM9Q86XI8 627 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SMIM35A0A1B0GVV1 85 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 RAD51DO75771 328 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 TOXO94900 526 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 OPN1SWP03999 348 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 CDK2P24941 298 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ARSFP54793 590 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SLCO2A1Q92959 643 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 FAXDC2Q96IV6 333 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 OR52B2Q96RD2 323 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 HAPLN3Q96S86 360 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ZDHHC2Q9UIJ5 367 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 UTS2RQ9UKP6 389 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 TREHO43280 583 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ACTC1P68032 377 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ACTA1P68133 377 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF630Q2M218 657 aaPredicted RBP13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SLC16A10Q8TF71 515 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 TMEM45AQ9NWC5 275 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 VSTM5A8MXK1 200 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 CRYZL1O95825 349 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ELK4P28324 431 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 NAT8LQ8N9F0 302 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 STK35Q8TDR2 534 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 NDRG1Q92597 394 aaKnown RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 TSPAN15O95858 294 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 HPRP00739 348 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 MAGEA3P43357 314 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 CYBRD1Q53TN4 286 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 CATSPERGQ6ZRH7 1159 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 UPF1Q92900 1129 aaKnown RBP eCLIP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 PSMG2Q969U7 264 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 GPR33Q49SQ1 333 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 LRIF1Q5T3J3 769 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 C7orf50Q9BRJ6 194 aaKnown RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 PNO1Q9NRX1 252 aaKnown RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 A0A1B0GVT2 93 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 A8MT66 165 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 RNF225M0QZC1 329 aaPredicted RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 SOX14O95416 240 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 RPL35P42766 123 aaKnown RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ATP6AP1Q15904 470 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 RPL13AP3Q6NVV1 102 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ITPKCQ96DU7 683 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF317Q96PQ6 595 aaPredicted RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 HEPHQ9BQS7 1158 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 PPIL3Q9H2H8 161 aaKnown RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 TP63Q9H3D4 680 aaPredicted RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 OR2S2Q9NQN1 319 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ABCB8Q9NUT2 735 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 WNT10BO00744 389 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 S1PR1P21453 382 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 UGCGQ16739 394 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 LIPKQ5VXJ0 399 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 OR4F3Q6IEY1 312 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 SLC2A7Q6PXP3 512 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 PLEKHG7Q6ZR37 379 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 GPC2Q8N158 579 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 PYROXD2Q8N2H3 581 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 HERC2P3Q9BVR0 1158 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 PTTG1O95997 202 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 KLK1P06870 262 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ERVK-21P61565 698 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ODF4Q2M2E3 257 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 ESX1Q8N693 406 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 CHRNA1P02708 482 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 CFL1P23528 166 aaKnown RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 RPL10P27635 214 aaKnown RBP13.44□□□□□ -0.26
CSPG4-201ENST00000308508 TCEANCQ8N8B7 351 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 CHPT1Q8WUD6 406 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 NSMAFQ92636 917 aa13.44□□□□□ -0.26
CSPG4-201ENST00000308508 PAHP00439 452 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 TGFB1P01137 390 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 CASRP41180 1078 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 IRF5Q13568 498 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 SLC22A10Q63ZE4 541 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 IRF2BP1Q8IU81 584 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 C14orf119Q9NWQ9 140 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms