RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 ADIPOR2Q86V24 386 aa15.7■□□□□ 0.1
CTCF-201ENST00000264010 NETO1Q8TDF5 533 aa15.7■□□□□ 0.1
CTCF-201ENST00000264010 TRIM43Q96BQ3 446 aaPredicted RBP15.7■□□□□ 0.1
CTCF-201ENST00000264010 EGLN2Q96KS0 407 aa15.7■□□□□ 0.1
CTCF-201ENST00000264010 KAT8Q9H7Z6 458 aaKnown RBP15.7■□□□□ 0.1
CTCF-201ENST00000264010 N6AMT1Q9Y5N5 214 aa15.7■□□□□ 0.1
CTCF-201ENST00000264010 LOC100130705A0A1B0GUX0 176 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 ANGPTL1O95841 491 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 PCCBP05166 539 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 ITIH1P19827 911 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 KCNAB2Q13303 367 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 APOFQ13790 326 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 ELAVL3Q14576 367 aaKnown RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 GRIN2CQ14957 1233 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 PARS2Q7L3T8 475 aaKnown RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 FAM110BQ8TC76 370 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 SLC5A11Q8WWX8 675 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 ISOC1Q96CN7 298 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 CPPED1Q9BRF8 314 aaPredicted RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 TMEM246Q9BRR3 403 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 TM9SF3Q9HD45 589 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.69■□□□□ 0.1
CTCF-201ENST00000264010 VWA8A3KMH1 1905 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 PIPSLA2A3N6 862 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 GFYI3L273 518 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 SAP18O00422 153 aaKnown RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 C1GALT1C1LP0DN25 315 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 RRM2P31350 389 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 KDELR2P33947 212 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 VIPR2P41587 438 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 HLCSP50747 726 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 SRP54P61011 504 aaKnown RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 GPM6BQ13491 265 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 EIF4HQ15056 248 aaKnown RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 PRAMEF14Q5SWL7 426 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 PRAMEF13Q5VWM6 474 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 FBXO46Q6PJ61 603 aaPredicted RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 GPR149Q86SP6 731 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 EPHX4Q8IUS5 362 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 HUS1BQ8NHY5 278 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 NODALQ96S42 347 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 TMEM245Q9H330 911 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 MYO7AQ13402 2215 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 PLXNA3P51805 1871 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 PRR23D1E9PI22 279 aaPredicted RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 PRR23D2P0DMB1 279 aaPredicted RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 TIA1P31483 386 aaKnown RBP eCLIP15.69■□□□□ 0.18e-8■■■■□ 22.8
CTCF-201ENST00000264010 PRLHRP49683 370 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 SF3B4Q15427 424 aaKnown RBP eCLIP15.69■□□□□ 0.1
CTCF-201ENST00000264010 SKIV2LQ15477 1246 aaKnown RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 CDKN3Q16667 212 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 AAK1Q2M2I8 961 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 METTL2AQ96IZ6 378 aaKnown RBP15.69■□□□□ 0.1
CTCF-201ENST00000264010 NEK6Q9HC98 313 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 PCDHB11Q9Y5F2 797 aa15.69■□□□□ 0.1
CTCF-201ENST00000264010 SLCO2B1O94956 709 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 FPR1P21462 350 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 SLC6A12P48065 614 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 TBPL1P62380 186 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 PDGFRLQ15198 375 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 ZNF77Q15935 545 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 AKIRIN2Q53H80 203 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 CAMKK1Q8N5S9 505 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 OR7G3Q8NG95 312 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 UTP15Q8TED0 518 aaKnown RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 WDR12Q9GZL7 423 aaKnown RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 ENOPH1Q9UHY7 261 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 ARPC4-TTLL3A0A0A6YYG9 625 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 LILRB3O75022 631 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 FSHRP23945 695 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 CA5AP35218 305 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 ANXA11P50995 505 aaKnown RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 ZNF763Q0D2J5 394 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 CYP4Z1Q86W10 505 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 GALNT12Q8IXK2 581 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 SLC15A4Q8N697 577 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 METTL25Q8N6Q8 603 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 C12orf76Q8N812 135 aaPredicted RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 HCAR2Q8TDS4 363 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 DTD2Q96FN9 168 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 GFM1Q96RP9 751 aaKnown RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 OR51B5Q9H339 312 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 ACTL8Q9H568 366 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 BRF2Q9HAW0 419 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 IGLV3-16A0A075B6K0 115 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 CYP17A1P05093 508 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 ELK4P28324 431 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 WASP42768 502 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 SPIBQ01892 262 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 KRR1Q13601 381 aaKnown RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 ERN2Q76MJ5 926 aaKnown RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 CCDC28AQ8IWP9 274 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 TTC29Q8NA56 475 aaPredicted RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 ZNF540Q8NDQ6 660 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 HSH2DQ96JZ2 352 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 CCNB1IP1Q9NPC3 277 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 PHPT1Q9NRX4 125 aaPredicted RBP15.68■□□□□ 0.1
CTCF-201ENST00000264010 FAM118AQ9NWS6 357 aa15.68■□□□□ 0.1
CTCF-201ENST00000264010 GREB1Q4ZG55 1949 aa15.67■□□□□ 0.1
CTCF-201ENST00000264010 SYNDIG1LA6NDD5 238 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms