RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RIOK2Q9BVS4 552 aaKnown RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 OR2A25A4D2G3 310 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 TPST2O60704 377 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 SLC16A8O95907 504 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 PTHP01270 115 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 TGM1P22735 817 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 GRK3P35626 688 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 CAMK2BQ13554 666 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 TSTQ16762 297 aaKnown RBP12.17□□□□□ -0.46
LIG1-201ENST00000263274 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.17□□□□□ -0.46
LIG1-201ENST00000263274 OTOP2Q7RTS6 562 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 ELMOD1Q8N336 334 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 CNPPD1Q9BV87 410 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 FAM120CQ9NX05 1096 aaKnown RBP12.17□□□□□ -0.46
LIG1-201ENST00000263274 CARD8Q9Y2G2 431 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 TSPAN6O43657 245 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 CATP04040 527 aaKnown RBP12.17□□□□□ -0.46
LIG1-201ENST00000263274 KRT8P05787 483 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 URODP06132 367 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 HLA-EP13747 358 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 MAPK8P45983 427 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 PFN3P60673 137 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 RPS26P62854 115 aaKnown RBP12.17□□□□□ -0.46
LIG1-201ENST00000263274 SMU1Q2TAY7 513 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 TRAF7Q6Q0C0 670 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 C11orf96Q7Z7L8 435 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 HMGN2P46Q86SG4 172 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 TCAIMQ8N3R3 496 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 HUS1BQ8NHY5 278 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 VANGL1Q8TAA9 524 aaPredicted RBP12.17□□□□□ -0.46
LIG1-201ENST00000263274 CYB5D2Q8WUJ1 264 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 FOPNLQ96NB1 174 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 DOHHQ9BU89 302 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 SLC6A14Q9UN76 642 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 OR51B4Q9Y5P0 310 aa12.17□□□□□ -0.46
LIG1-201ENST00000263274 ARHGEF33A8MVX0 844 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 LOC110117498-PIK3R3F6TDL0 507 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CTDSP2O14595 271 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 PCDH17O14917 1159 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CBSLP0DN79 551 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 JUNDP17535 347 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 GPX2P18283 190 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 GRK5P34947 590 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CBSP35520 551 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 MAGEA2P43356 314 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 HNMTP50135 292 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ITGA1P56199 1179 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 WNT3P56703 355 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SCARB2Q14108 478 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 TAB1Q15750 504 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 DESI1Q6ICB0 168 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 RNF130Q86XS8 419 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ALG14Q96F25 216 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 IGSF21Q96ID5 467 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CCM2Q9BSQ5 444 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CTPS2Q9NRF8 586 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SLC25A13Q9UJS0 675 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 MYO10Q9HD67 2058 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 TRBV5-4A0A0C4DH59 114 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 C5orf58C9J3I9 102 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ADAMDEC1O15204 470 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 HOXA2O43364 376 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 UPK1BO75841 260 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SERPIND1P05546 499 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SPNP16150 400 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SOX6P35712 828 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 HNF4AP41235 474 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SPINT3P49223 89 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CXCR4P61073 352 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 COPZ1P61923 177 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 MRPS15P82914 257 aaKnown RBP12.16□□□□□ -0.46
LIG1-201ENST00000263274 TCTN1Q2MV58 587 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 IFI44LQ53G44 452 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ATAD3BQ5T9A4 648 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 TNFAIP8L2Q6P589 184 aaPredicted RBP12.16□□□□□ -0.46
LIG1-201ENST00000263274 TRMT11Q7Z4G4 463 aaKnown RBP12.16□□□□□ -0.46
LIG1-201ENST00000263274 LYSMD2Q8IV50 215 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SLC34A3Q8N130 599 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 UBTD2Q8WUN7 234 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 WRAP53Q9BUR4 548 aaKnown RBP12.16□□□□□ -0.46
LIG1-201ENST00000263274 MIEF1Q9NQG6 463 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 MOSPD1Q9UJG1 213 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 KCNE2Q9Y6J6 123 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CCDC88CQ9P219 2028 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 TRPM7Q96QT4 1865 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ANKRD34BA5PLL1 514 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ANKDD1BA6NHY2 528 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 SOCS5O75159 536 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 PDHA2P29803 388 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CTSCP53634 463 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 HBA1P69905 142 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ZNF284Q2VY69 593 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 MPPE1Q53F39 396 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 C22orf39Q6P5X5 142 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 CCBE1Q6UXH8 406 aaPredicted RBP12.16□□□□□ -0.46
LIG1-201ENST00000263274 USP43Q70EL4 1123 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 TRAPPC5Q8IUR0 188 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 ST13P5Q8NFI4 369 aaPredicted RBP12.16□□□□□ -0.46
LIG1-201ENST00000263274 OR7G3Q8NG95 312 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 APH1BQ8WW43 257 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms