RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 HBQ1P09105 142 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 ZNF84P51523 738 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 PPIGQ13427 754 aaKnown RBP eCLIP5.9□□□□□ -1.462e-6■■□□□ 14.2
VPS13D-201ENST00000011700 ATAT1Q5SQI0 421 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 PLEKHS1Q5SXH7 462 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 TTLL10Q6ZVT0 673 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 SMIM15Q7Z3B0 74 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 SVBPQ8N300 66 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 PCDH20Q8N6Y1 951 aaKnown RBP5.9□□□□□ -1.46
VPS13D-201ENST00000011700 OR9A4Q8NGU2 314 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 OR6K6Q8NGW6 343 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 FERD3LQ96RJ6 166 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 CADM1Q9BY67 442 aaKnown RBP5.9□□□□□ -1.46
VPS13D-201ENST00000011700 ACTRT3Q9BYD9 372 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 B3GNT4Q9C0J1 378 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 CDT1Q9H211 546 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 MAT2BQ9NZL9 334 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 PSAT1Q9Y617 370 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 COL6A6A6NMZ7 2263 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 CASTOR2A6NHX0 329 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 SHOXO15266 292 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 CILPO75339 1184 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 KCNC1P48547 511 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 GJA9P57773 515 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 ERVK-21P61565 698 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 SERINC3Q13530 473 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 TMEM35AQ53FP2 167 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 ACTBL2Q562R1 376 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 BANPQ8N9N5 519 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 NANOS1Q8WY41 292 aaKnown RBP5.9□□□□□ -1.46
VPS13D-201ENST00000011700 HOXB13Q92826 284 aaPredicted RBP5.9□□□□□ -1.46
VPS13D-201ENST00000011700 ZNF641Q96N77 438 aaPredicted RBP5.9□□□□□ -1.46
VPS13D-201ENST00000011700 KCNC2Q96PR1 638 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 RBP7Q96R05 134 aa5.9□□□□□ -1.46
VPS13D-201ENST00000011700 SECISBP2Q96T21 854 aaKnown RBP5.9□□□□□ -1.46
VPS13D-201ENST00000011700 PDGFDQ9GZP0 370 aaPredicted RBP5.9□□□□□ -1.46
VPS13D-201ENST00000011700 AGAP5A6NIR3 686 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SNAPINO95295 136 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 PLGP00747 810 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 HK1P19367 917 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SSTR3P32745 418 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 TAS2R20P59543 309 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 RPS14P62263 151 aaKnown RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 DUSP28Q4G0W2 176 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 ATG9BQ674R7 924 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 REP15Q6BDI9 236 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SLC8B1Q6J4K2 584 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 PYURFQ96I23 114 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 AMDHD1Q96NU7 426 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 PRRT1Q99946 306 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 NMUR2Q9GZQ4 415 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 LDAHQ9H6V9 325 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 MINDY3Q9H8M7 445 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 GPSM3Q9Y4H4 160 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 DNMT3AQ9Y6K1 912 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SMLR1H3BR10 107 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 LGALS2P05162 132 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 RGS19P49795 217 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 MALLQ13021 153 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 TSPYL5Q86VY4 417 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 FBXO16Q8IX29 292 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 FOXRED1Q96CU9 486 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 PPM1MQ96MI6 270 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 PURBQ96QR8 312 aaKnown RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SIAEQ9HAT2 523 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SLCO1B3Q9NPD5 702 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 PHF24Q9UPV7 400 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 RTCAO00442 366 aaKnown RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 MMP20O60882 483 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 CNTN5O94779 1100 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 KCNK5O95279 499 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 IL7P13232 177 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 EMX2Q04743 252 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 LYSMD3Q7Z3D4 306 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 THOC6Q86W42 341 aaKnown RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 DRAXINQ8NBI3 349 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SLC38A3Q99624 504 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SLCO5A1Q9H2Y9 848 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 MED1Q15648 1581 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 ARL5CA6NH57 179 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 KCNU1A8MYU2 1149 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 FOXD2O60548 495 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 CRTAPO75718 401 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 LATS1O95835 1130 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 JAM2P57087 298 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF763Q0D2J5 394 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 SCARB2Q14108 478 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 TCEAL1Q15170 157 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 CATSPEREQ5SY80 951 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 UGT2A3Q6UWM9 527 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 RBM12BQ8IXT5 1001 aaKnown RBP5.9□□□□□ -1.47
VPS13D-201ENST00000011700 LAS2Q8IYD9 372 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 OR5L2Q8NGL0 311 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 AKT1S1Q96B36 256 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 ZDHHC12Q96GR4 267 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 ARL5BQ96KC2 179 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 BRF2Q9HAW0 419 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 PLXNA1Q9UIW2 1896 aa5.9□□□□□ -1.47
VPS13D-201ENST00000011700 I3L521 148 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms