RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	ATG13	Q06628	738 aa		5.41	□□□□□ -1.54
CUP9	YPL177C	PIN2	Q12057	282 aa		5.41	□□□□□ -1.54
CUP9	YPL177C	KIN2	P13186	1147 aa	Known RBP	5.4	□□□□□ -1.54
CUP9	YPL177C	CDC34	P14682	295 aa		5.4	□□□□□ -1.54
CUP9	YPL177C	NAP1	P25293	417 aa	Known RBP	5.4	□□□□□ -1.54
CUP9	YPL177C	SYP1	P25623	870 aa	Known RBP	5.4	□□□□□ -1.54
CUP9	YPL177C	MLS1	P30952	554 aa		5.4	□□□□□ -1.54
CUP9	YPL177C	CNN1	P43618	361 aa		5.4	□□□□□ -1.54
CUP9	YPL177C	ALD6	P54115	500 aa	Known RBP	5.4	□□□□□ -1.54
CUP9	YPL177C	RTT10	Q08924	1013 aa		5.4	□□□□□ -1.54
CUP9	YPL177C	HMI1	Q12039	706 aa		5.4	□□□□□ -1.54
CUP9	YPL177C	CLN2	P20438	545 aa		5.39	□□□□□ -1.55
CUP9	YPL177C	DBP5	P20449	482 aa	Known RBP	5.39	□□□□□ -1.55
CUP9	YPL177C	APL1	P27351	700 aa		5.39	□□□□□ -1.55
CUP9	YPL177C	PMI40	P29952	429 aa	Known RBP	5.39	□□□□□ -1.55
CUP9	YPL177C	VAC8	P39968	578 aa		5.39	□□□□□ -1.55
CUP9	YPL177C	MPH1	P40562	993 aa		5.39	□□□□□ -1.55
CUP9	YPL177C	FAA4	P47912	694 aa	Known RBP	5.39	□□□□□ -1.55
CUP9	YPL177C	CWC24	P53769	259 aa		5.39	□□□□□ -1.55
CUP9	YPL177C	YLR224W	Q05947	369 aa		5.39	□□□□□ -1.55
CUP9	YPL177C	EMC1	P25574	760 aa		5.38	□□□□□ -1.55
CUP9	YPL177C	CHS7	P38843	316 aa		5.38	□□□□□ -1.55
CUP9	YPL177C	PHO23	P50947	330 aa		5.38	□□□□□ -1.55
CUP9	YPL177C	GTF1	P53260	183 aa	Predicted RBP	5.38	□□□□□ -1.55
CUP9	YPL177C	GDE1	Q02979	1223 aa		5.38	□□□□□ -1.55
CUP9	YPL177C	PMA1	P05030	918 aa	Known RBP	5.37	□□□□□ -1.55
CUP9	YPL177C	BAS1	P22035	811 aa		5.37	□□□□□ -1.55
CUP9	YPL177C	RAD27	P26793	382 aa		5.37	□□□□□ -1.55
CUP9	YPL177C	AIM21	P40563	679 aa		5.37	□□□□□ -1.55
CUP9	YPL177C	MSC2	Q03455	724 aa		5.37	□□□□□ -1.55
CUP9	YPL177C	RER2	P35196	286 aa		5.36	□□□□□ -1.55
CUP9	YPL177C	GCV2	P49095	1034 aa		5.36	□□□□□ -1.55
CUP9	YPL177C	EEB1	Q02891	456 aa		5.36	□□□□□ -1.55
CUP9	YPL177C	ACE2	P21192	770 aa		5.35	□□□□□ -1.55
CUP9	YPL177C	DCG1	P32460	244 aa		5.35	□□□□□ -1.55
CUP9	YPL177C	NOP12	Q08208	459 aa	Known RBP	5.35	□□□□□ -1.55
CUP9	YPL177C	TMA46	Q12000	345 aa	Known RBP	5.35	□□□□□ -1.55
CUP9	YPL177C	PRI2	P20457	528 aa		5.34	□□□□□ -1.55
CUP9	YPL177C	YPT53	P36019	220 aa		5.34	□□□□□ -1.55
CUP9	YPL177C	MXR1	P40029	184 aa		5.34	□□□□□ -1.55
CUP9	YPL177C	YGR053C	P53234	283 aa		5.34	□□□□□ -1.55
CUP9	YPL177C	CTF4	Q01454	927 aa		5.34	□□□□□ -1.55
CUP9	YPL177C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.34	□□□□□ -1.55	not detected
CUP9	YPL177C	BI4	P03879	638 aa		5.33	□□□□□ -1.56
CUP9	YPL177C	SIP5	P40210	489 aa	Known RBP	5.33	□□□□□ -1.56
CUP9	YPL177C	KIN4	Q01919	800 aa		5.33	□□□□□ -1.56
CUP9	YPL177C	TRP2	P00899	507 aa	Known RBP	5.32	□□□□□ -1.56
CUP9	YPL177C	RPL11A	P0C0W9	174 aa	Known RBP	5.32	□□□□□ -1.56
CUP9	YPL177C	RAD53	P22216	821 aa		5.32	□□□□□ -1.56
CUP9	YPL177C	DEF1	P35732	738 aa	Known RBP	5.32	□□□□□ -1.56
CUP9	YPL177C	UGA2	P38067	497 aa		5.32	□□□□□ -1.56
CUP9	YPL177C	RRT14	P40470	206 aa		5.32	□□□□□ -1.56
CUP9	YPL177C	MND2	P40577	368 aa		5.32	□□□□□ -1.56
CUP9	YPL177C	HFM1	P51979	1187 aa		5.32	□□□□□ -1.56
CUP9	YPL177C	RPL11B	Q3E757	174 aa	Predicted RBP	5.32	□□□□□ -1.56
CUP9	YPL177C	DBP2	P24783	546 aa	Known RBP	5.31	□□□□□ -1.56
CUP9	YPL177C	SLA2	P33338	968 aa		5.31	□□□□□ -1.56
CUP9	YPL177C	MOT2	P34909	587 aa	Known RBP	5.31	□□□□□ -1.56
CUP9	YPL177C	MSS4	P38994	779 aa		5.31	□□□□□ -1.56
CUP9	YPL177C	TYW3	P53177	273 aa		5.31	□□□□□ -1.56
CUP9	YPL177C	TIF35	Q04067	274 aa	Known RBP	5.31	□□□□□ -1.56
CUP9	YPL177C	ESC2	Q06340	456 aa		5.31	□□□□□ -1.56
CUP9	YPL177C	URN1	Q06525	465 aa	Known RBP	5.31	□□□□□ -1.56
CUP9	YPL177C	ADY3	Q07732	790 aa		5.31	□□□□□ -1.56
CUP9	YPL177C	ACM1	Q08981	209 aa		5.31	□□□□□ -1.56
CUP9	YPL177C	GNT1	Q12096	491 aa		5.31	□□□□□ -1.56
CUP9	YPL177C	FAL1	Q12099	399 aa	Known RBP	5.31	□□□□□ -1.56
CUP9	YPL177C	LYP1	P32487	611 aa		5.3	□□□□□ -1.56
CUP9	YPL177C	YKL069W	P36088	180 aa		5.3	□□□□□ -1.56
CUP9	YPL177C	PLB1	P39105	664 aa		5.3	□□□□□ -1.56
CUP9	YPL177C	YLR225C	Q05948	407 aa	Known RBP	5.3	□□□□□ -1.56
CUP9	YPL177C	TPO1	Q07824	586 aa		5.3	□□□□□ -1.56
CUP9	YPL177C	OPI10	Q08202	246 aa		5.3	□□□□□ -1.56
CUP9	YPL177C	WRS1	Q12109	432 aa	Known RBP	5.29	□□□□□ -1.56
CUP9	YPL177C	INO1	P11986	533 aa		5.28	□□□□□ -1.56
CUP9	YPL177C	ABD1	P32783	436 aa	Predicted RBP	5.28	□□□□□ -1.56
CUP9	YPL177C	MCM7	P38132	845 aa		5.28	□□□□□ -1.56
CUP9	YPL177C	MET12	P46151	657 aa		5.28	□□□□□ -1.56
CUP9	YPL177C	XYL2	Q07993	356 aa		5.28	□□□□□ -1.56
CUP9	YPL177C	SSF2	Q12153	453 aa	Predicted RBP	5.28	□□□□□ -1.56
CUP9	YPL177C	PNT1	P38969	423 aa		5.27	□□□□□ -1.57
CUP9	YPL177C	GEM1	P39722	662 aa		5.27	□□□□□ -1.57
CUP9	YPL177C	SPO20	Q04359	397 aa		5.27	□□□□□ -1.57
CUP9	YPL177C	EXG2	P52911	562 aa		5.26	□□□□□ -1.57
CUP9	YPL177C	MTC3	P53077	123 aa		5.26	□□□□□ -1.57
CUP9	YPL177C	YPL066W	Q12194	479 aa		5.26	□□□□□ -1.57
CUP9	YPL177C	HIS5	P07172	385 aa		5.25	□□□□□ -1.57
CUP9	YPL177C	GRX1	P25373	110 aa	Known RBP	5.25	□□□□□ -1.57
CUP9	YPL177C	POA1	P38218	177 aa		5.25	□□□□□ -1.57
CUP9	YPL177C	ZRG8	P40021	1076 aa		5.25	□□□□□ -1.57
CUP9	YPL177C	CHA4	P43634	648 aa		5.25	□□□□□ -1.57
CUP9	YPL177C	TDA5	Q06417	326 aa	Known RBP	5.25	□□□□□ -1.57
CUP9	YPL177C	SPF1	P39986	1215 aa	Known RBP	5.24	□□□□□ -1.57
CUP9	YPL177C	YGL176C	P46945	554 aa		5.24	□□□□□ -1.57
CUP9	YPL177C	NNF1	P47149	201 aa		5.24	□□□□□ -1.57
CUP9	YPL177C	THS1	P04801	734 aa	Known RBP	5.23	□□□□□ -1.57
CUP9	YPL177C	AGP1	P25376	633 aa		5.23	□□□□□ -1.57
CUP9	YPL177C	KCS1	Q12494	1050 aa		5.23	□□□□□ -1.57
CUP9	YPL177C	RKM4	Q12504	494 aa		5.23	□□□□□ -1.57
CUP9	YPL177C	YKL107W	P34251	309 aa		5.22	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms