RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 MAPK8IP3Q9UPT6 1336 aa22.38■■□□□ 1.17
PHGDH-234ENST00000642041 PARP3Q9Y6F1 533 aa22.38■■□□□ 1.17
PHGDH-234ENST00000642041 SBF1O95248 1867 aa22.38■■□□□ 1.17
PHGDH-234ENST00000642041 C4AP0C0L4 1744 aa22.37■■□□□ 1.17
PHGDH-234ENST00000642041 ZC3H4Q9UPT8 1303 aaKnown RBP22.37■■□□□ 1.17
PHGDH-234ENST00000642041 APAF1O14727 1248 aa22.37■■□□□ 1.17
PHGDH-234ENST00000642041 PPM1GO15355 546 aaPredicted RBP22.37■■□□□ 1.17
PHGDH-234ENST00000642041 VEGFAP15692 232 aaPredicted RBP22.37■■□□□ 1.17
PHGDH-234ENST00000642041 RTCBQ9Y3I0 505 aaKnown RBP22.37■■□□□ 1.17
PHGDH-234ENST00000642041 RNF123Q5XPI4 1314 aa22.35■■□□□ 1.17
PHGDH-234ENST00000642041 GYS1P13807 737 aa22.35■■□□□ 1.17
PHGDH-234ENST00000642041 ADRA2BP18089 450 aa22.35■■□□□ 1.17
PHGDH-234ENST00000642041 PRDM10Q9NQV6 1147 aa22.35■■□□□ 1.17
PHGDH-234ENST00000642041 ASAP1Q9ULH1 1129 aa22.35■■□□□ 1.17
PHGDH-234ENST00000642041 CALD1Q05682 793 aaKnown RBP22.34■■□□□ 1.17
PHGDH-234ENST00000642041 ARHGEF1Q92888 912 aaKnown RBP22.34■■□□□ 1.17
PHGDH-234ENST00000642041 TMOD3Q9NYL9 352 aa22.34■■□□□ 1.17
PHGDH-234ENST00000642041 GLTPD2A6NH11 291 aa22.33■■□□□ 1.17
PHGDH-234ENST00000642041 U2SURPO15042 1029 aaKnown RBP22.33■■□□□ 1.17
PHGDH-234ENST00000642041 FKBP8Q14318 412 aa22.33■■□□□ 1.17
PHGDH-234ENST00000642041 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.33■■□□□ 1.17
PHGDH-234ENST00000642041 SLFN5Q08AF3 891 aa22.31■■□□□ 1.16
PHGDH-234ENST00000642041 RCAN3Q9UKA8 241 aa22.31■■□□□ 1.16
PHGDH-234ENST00000642041 FOXN1O15353 648 aa22.3■■□□□ 1.16
PHGDH-234ENST00000642041 CT47B1P0C2W7 299 aaPredicted RBP22.3■■□□□ 1.16
PHGDH-234ENST00000642041 RFC4P35249 363 aa22.3■■□□□ 1.16
PHGDH-234ENST00000642041 LMOD3Q0VAK6 560 aa22.3■■□□□ 1.16
PHGDH-234ENST00000642041 HSP90AB2PQ58FF8 381 aa22.3■■□□□ 1.16
PHGDH-234ENST00000642041 RC3H1Q5TC82 1133 aaKnown RBP22.3■■□□□ 1.16
PHGDH-234ENST00000642041 TRMT2AQ8IZ69 625 aaKnown RBP22.3■■□□□ 1.16
PHGDH-234ENST00000642041 IL16Q14005 1332 aa22.3■■□□□ 1.16
PHGDH-234ENST00000642041 WWC1Q8IX03 1113 aa22.29■■□□□ 1.16
PHGDH-234ENST00000642041 MYH16Q9H6N6 1097 aa22.29■■□□□ 1.16
PHGDH-234ENST00000642041 ATG3Q9NT62 314 aa22.29■■□□□ 1.16
PHGDH-234ENST00000642041 KDM6AO15550 1401 aaPredicted RBP22.29■■□□□ 1.16
PHGDH-234ENST00000642041 IL13P35225 146 aa22.28■■□□□ 1.16
PHGDH-234ENST00000642041 CCDC146Q8IYE0 955 aa22.28■■□□□ 1.16
PHGDH-234ENST00000642041 CREBZFQ9NS37 354 aa22.28■■□□□ 1.16
PHGDH-234ENST00000642041 SPG7Q9UQ90 795 aa22.28■■□□□ 1.16
PHGDH-234ENST00000642041 RPS6KA4O75676 772 aa22.27■■□□□ 1.16
PHGDH-234ENST00000642041 PLEKHF1Q96S99 279 aa22.27■■□□□ 1.16
PHGDH-234ENST00000642041 SALL2Q9Y467 1007 aaPredicted RBP22.27■■□□□ 1.16
PHGDH-234ENST00000642041 LMNB1P20700 586 aa22.26■■□□□ 1.15
PHGDH-234ENST00000642041 FAM161AQ3B820 660 aa22.26■■□□□ 1.15
PHGDH-234ENST00000642041 MKRN1Q9UHC7 482 aaKnown RBP22.26■■□□□ 1.15
PHGDH-234ENST00000642041 KDRP35968 1356 aa22.25■■□□□ 1.15
PHGDH-234ENST00000642041 CHRNA5P30532 468 aa22.25■■□□□ 1.15
PHGDH-234ENST00000642041 RASSF7Q02833 373 aa22.25■■□□□ 1.15
PHGDH-234ENST00000642041 CNTNAP4Q9C0A0 1308 aa22.25■■□□□ 1.15
PHGDH-234ENST00000642041 CTCFP49711 727 aaPredicted RBP22.24■■□□□ 1.15
PHGDH-234ENST00000642041 EIF4A2Q14240 407 aaKnown RBP22.24■■□□□ 1.15
PHGDH-234ENST00000642041 DUSP27Q5VZP5 1158 aa22.24■■□□□ 1.15
PHGDH-234ENST00000642041 SLC4A9Q96Q91 983 aa22.24■■□□□ 1.15
PHGDH-234ENST00000642041 POTECB2RU33 542 aa22.23■■□□□ 1.15
PHGDH-234ENST00000642041 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.23■■□□□ 1.15
PHGDH-234ENST00000642041 TMPOP42166 694 aaKnown RBP22.22■■□□□ 1.15
PHGDH-234ENST00000642041 PPP4R2Q9NY27 417 aa22.22■■□□□ 1.15
PHGDH-234ENST00000642041 ZNF831Q5JPB2 1677 aa22.22■■□□□ 1.15
PHGDH-234ENST00000642041 NCAPD2Q15021 1401 aa22.22■■□□□ 1.15
PHGDH-234ENST00000642041 DDR1Q08345 913 aa22.21■■□□□ 1.15
PHGDH-234ENST00000642041 IFNL2Q8IZJ0 200 aa22.21■■□□□ 1.15
PHGDH-234ENST00000642041 AIDAQ96BJ3 306 aa22.21■■□□□ 1.15
PHGDH-234ENST00000642041 RSPH6AQ9H0K4 717 aa22.21■■□□□ 1.15
PHGDH-234ENST00000642041 RBM42Q9BTD8 480 aaKnown RBP22.2■■□□□ 1.14
PHGDH-234ENST00000642041 PHKG2P15735 406 aa22.19■■□□□ 1.14
PHGDH-234ENST00000642041 ZNF428Q96B54 188 aa22.19■■□□□ 1.14
PHGDH-234ENST00000642041 CDCA7LQ96GN5 454 aa22.19■■□□□ 1.14
PHGDH-234ENST00000642041 CNTNAP1P78357 1384 aa22.19■■□□□ 1.14
PHGDH-234ENST00000642041 MYH14Q7Z406 1995 aaKnown RBP22.18■■□□□ 1.14
PHGDH-234ENST00000642041 COL5A3P25940 1745 aaPredicted RBP22.18■■□□□ 1.14
PHGDH-234ENST00000642041 ABHD8Q96I13 439 aa22.18■■□□□ 1.14
PHGDH-234ENST00000642041 RRP1P56182 461 aaKnown RBP22.17■■□□□ 1.14
PHGDH-234ENST00000642041 NFE2L2Q16236 605 aa22.17■■□□□ 1.14
PHGDH-234ENST00000642041 CHADLQ6NUI6 762 aa22.17■■□□□ 1.14
PHGDH-234ENST00000642041 DPY19L2Q6NUT2 758 aa22.17■■□□□ 1.14
PHGDH-234ENST00000642041 PRKAR2BP31323 418 aa22.16■■□□□ 1.14
PHGDH-234ENST00000642041 RIPK4P57078 832 aa22.16■■□□□ 1.14
PHGDH-234ENST00000642041 SRP68Q9UHB9 627 aaKnown RBP22.16■■□□□ 1.14
PHGDH-234ENST00000642041 USP42Q9H9J4 1324 aaKnown RBP22.15■■□□□ 1.14
PHGDH-234ENST00000642041 POLRMTO00411 1230 aaKnown RBP22.15■■□□□ 1.14
PHGDH-234ENST00000642041 LBX1P52954 281 aa22.15■■□□□ 1.14
PHGDH-234ENST00000642041 CCDC88AQ3V6T2 1871 aa22.15■■□□□ 1.14
PHGDH-234ENST00000642041 MS4A1P11836 297 aa22.14■■□□□ 1.13
PHGDH-234ENST00000642041 TM4SF1P30408 202 aa22.14■■□□□ 1.13
PHGDH-234ENST00000642041 MLLT1Q03111 559 aaPredicted RBP22.14■■□□□ 1.13
PHGDH-234ENST00000642041 WBP1LQ9NX94 342 aa22.14■■□□□ 1.13
PHGDH-234ENST00000642041 TIAM2Q8IVF5 1701 aa22.14■■□□□ 1.13
PHGDH-234ENST00000642041 ERVV-2B6SEH9 535 aa22.13■■□□□ 1.13
PHGDH-234ENST00000642041 AAMPQ13685 434 aa22.13■■□□□ 1.13
PHGDH-234ENST00000642041 HTATSF1O43719 755 aaKnown RBP22.12■■□□□ 1.13
PHGDH-234ENST00000642041 RGS19P49795 217 aa22.12■■□□□ 1.13
PHGDH-234ENST00000642041 NEUROD2Q15784 382 aa22.12■■□□□ 1.13
PHGDH-234ENST00000642041 EYA1Q99502 592 aa22.12■■□□□ 1.13
PHGDH-234ENST00000642041 VEGFBP49765 207 aa22.11■■□□□ 1.13
PHGDH-234ENST00000642041 SULT6B1Q6IMI4 303 aa22.11■■□□□ 1.13
PHGDH-234ENST00000642041 TTLL6Q8N841 843 aa22.11■■□□□ 1.13
PHGDH-234ENST00000642041 NFKBIEO00221 500 aa22.1■■□□□ 1.13
PHGDH-234ENST00000642041 HMOX1P09601 288 aa22.1■■□□□ 1.13
PHGDH-234ENST00000642041 CRKLP46109 303 aaKnown RBP22.1■■□□□ 1.13
PHGDH-234ENST00000642041 GNAI1P63096 354 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms