RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 GYS1P13807 737 aa12.39□□□□□ -0.43
PHGDH-228ENST00000641847 LMNB1P20700 586 aa12.39□□□□□ -0.43
PHGDH-228ENST00000641847 KCNA3P22001 575 aa12.39□□□□□ -0.43
PHGDH-228ENST00000641847 RC3H1Q5TC82 1133 aaKnown RBP12.39□□□□□ -0.43
PHGDH-228ENST00000641847 PNNQ9H307 717 aaKnown RBP12.39□□□□□ -0.43
PHGDH-228ENST00000641847 PRDM10Q9NQV6 1147 aa12.39□□□□□ -0.43
PHGDH-228ENST00000641847 TOGARAM1Q9Y4F4 1720 aa12.39□□□□□ -0.43
PHGDH-228ENST00000641847 MAPK8IP3Q9UPT6 1336 aa12.38□□□□□ -0.43
PHGDH-228ENST00000641847 RUNDC1Q96C34 613 aa12.38□□□□□ -0.43
PHGDH-228ENST00000641847 PLEKHF1Q96S99 279 aa12.38□□□□□ -0.43
PHGDH-228ENST00000641847 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.38□□□□□ -0.43
PHGDH-228ENST00000641847 TNRC6CQ9HCJ0 1690 aaKnown RBP12.38□□□□□ -0.43
PHGDH-228ENST00000641847 N4BP2Q86UW6 1770 aaPredicted RBP12.38□□□□□ -0.43
PHGDH-228ENST00000641847 KIF13BQ9NQT8 1826 aa12.37□□□□□ -0.43
PHGDH-228ENST00000641847 RPS6KA4O75676 772 aa12.37□□□□□ -0.43
PHGDH-228ENST00000641847 CTCFP49711 727 aaPredicted RBP12.37□□□□□ -0.43
PHGDH-228ENST00000641847 HNRNPUQ00839 825 aaKnown RBP eCLIP12.37□□□□□ -0.43
PHGDH-228ENST00000641847 DPY19L2Q6NUT2 758 aa12.37□□□□□ -0.43
PHGDH-228ENST00000641847 IFNL2Q8IZJ0 200 aa12.37□□□□□ -0.43
PHGDH-228ENST00000641847 RBM42Q9BTD8 480 aaKnown RBP12.37□□□□□ -0.43
PHGDH-228ENST00000641847 CREBZFQ9NS37 354 aa12.37□□□□□ -0.43
PHGDH-228ENST00000641847 ATG3Q9NT62 314 aa12.37□□□□□ -0.43
PHGDH-228ENST00000641847 NEFMP07197 916 aa12.36□□□□□ -0.43
PHGDH-228ENST00000641847 PKD1L3Q7Z443 1732 aa12.36□□□□□ -0.43
PHGDH-228ENST00000641847 CNTNAP4Q9C0A0 1308 aa12.36□□□□□ -0.43
PHGDH-228ENST00000641847 APAF1O14727 1248 aa12.35□□□□□ -0.43
PHGDH-228ENST00000641847 MKRN1Q9UHC7 482 aaKnown RBP12.35□□□□□ -0.43
PHGDH-228ENST00000641847 C4AP0C0L4 1744 aa12.34□□□□□ -0.43
PHGDH-228ENST00000641847 FOXN1O15353 648 aa12.34□□□□□ -0.43
PHGDH-228ENST00000641847 CHRNA5P30532 468 aa12.34□□□□□ -0.43
PHGDH-228ENST00000641847 PHACTR3Q96KR7 559 aa12.34□□□□□ -0.43
PHGDH-228ENST00000641847 DLG5Q8TDM6 1919 aa12.33□□□□□ -0.44
PHGDH-228ENST00000641847 ERVV-2B6SEH9 535 aa12.33□□□□□ -0.44
PHGDH-228ENST00000641847 PHKG2P15735 406 aa12.33□□□□□ -0.44
PHGDH-228ENST00000641847 RRP7AQ9Y3A4 280 aaKnown RBP12.33□□□□□ -0.44
PHGDH-228ENST00000641847 KIAA1551Q9HCM1 1747 aa12.33□□□□□ -0.44
PHGDH-228ENST00000641847 ITGB4P16144 1822 aa12.32□□□□□ -0.44
PHGDH-228ENST00000641847 ARFGEF1Q9Y6D6 1849 aa12.32□□□□□ -0.44
PHGDH-228ENST00000641847 HSP90AB1P08238 724 aaKnown RBP12.32□□□□□ -0.44
PHGDH-228ENST00000641847 RASSF7Q02833 373 aa12.32□□□□□ -0.44
PHGDH-228ENST00000641847 NFE2L2Q16236 605 aa12.32□□□□□ -0.44
PHGDH-228ENST00000641847 FAM161AQ3B820 660 aa12.32□□□□□ -0.44
PHGDH-228ENST00000641847 CHADLQ6NUI6 762 aa12.32□□□□□ -0.44
PHGDH-228ENST00000641847 SALL2Q9Y467 1007 aaPredicted RBP12.32□□□□□ -0.44
PHGDH-228ENST00000641847 ZBED9Q6R2W3 1325 aa12.32□□□□□ -0.44
PHGDH-228ENST00000641847 ZPR1O75312 459 aa12.31□□□□□ -0.44
PHGDH-228ENST00000641847 TMPOP42166 694 aaKnown RBP12.31□□□□□ -0.44
PHGDH-228ENST00000641847 FKBP8Q14318 412 aa12.31□□□□□ -0.44
PHGDH-228ENST00000641847 MTHFSDQ2M296 383 aaKnown RBP12.31□□□□□ -0.44
PHGDH-228ENST00000641847 TTLL6Q8N841 843 aa12.31□□□□□ -0.44
PHGDH-228ENST00000641847 GAS2L2Q8NHY3 880 aa12.31□□□□□ -0.44
PHGDH-228ENST00000641847 MLLT1Q03111 559 aaPredicted RBP12.3□□□□□ -0.44
PHGDH-228ENST00000641847 NEUROD2Q15784 382 aa12.3□□□□□ -0.44
PHGDH-228ENST00000641847 AMOTQ4VCS5 1084 aa12.3□□□□□ -0.44
PHGDH-228ENST00000641847 PLEKHO1Q53GL0 409 aaPredicted RBP12.3□□□□□ -0.44
PHGDH-228ENST00000641847 USP42Q9H9J4 1324 aaKnown RBP12.3□□□□□ -0.44
PHGDH-228ENST00000641847 KDM6AO15550 1401 aaPredicted RBP12.29□□□□□ -0.44
PHGDH-228ENST00000641847 RIPK4P57078 832 aa12.29□□□□□ -0.44
PHGDH-228ENST00000641847 DDR1Q08345 913 aa12.29□□□□□ -0.44
PHGDH-228ENST00000641847 NGEFQ8N5V2 710 aa12.29□□□□□ -0.44
PHGDH-228ENST00000641847 ABHD8Q96I13 439 aa12.29□□□□□ -0.44
PHGDH-228ENST00000641847 BRCA1P38398 1863 aaKnown RBP12.29□□□□□ -0.44
PHGDH-228ENST00000641847 CNTNAP1P78357 1384 aa12.29□□□□□ -0.44
PHGDH-228ENST00000641847 H0YIN7 160 aa12.28□□□□□ -0.44
PHGDH-228ENST00000641847 POLRMTO00411 1230 aaKnown RBP12.28□□□□□ -0.44
PHGDH-228ENST00000641847 CRKLP46109 303 aaKnown RBP12.28□□□□□ -0.44
PHGDH-228ENST00000641847 LBX1P52954 281 aa12.28□□□□□ -0.44
PHGDH-228ENST00000641847 CABP4P57796 275 aa12.28□□□□□ -0.44
PHGDH-228ENST00000641847 NCBP3Q53F19 620 aaKnown RBP12.28□□□□□ -0.44
PHGDH-228ENST00000641847 ZNF530Q6P9A1 599 aaPredicted RBP12.28□□□□□ -0.44
PHGDH-228ENST00000641847 SLC4A9Q96Q91 983 aa12.28□□□□□ -0.44
PHGDH-228ENST00000641847 SRP68Q9UHB9 627 aaKnown RBP12.28□□□□□ -0.44
PHGDH-228ENST00000641847 IQCA1LA6NCM1 817 aa12.27□□□□□ -0.45
PHGDH-228ENST00000641847 PTCD1O75127 700 aaKnown RBP12.27□□□□□ -0.45
PHGDH-228ENST00000641847 LMOD3Q0VAK6 560 aa12.27□□□□□ -0.45
PHGDH-228ENST00000641847 CCDC27Q2M243 656 aa12.27□□□□□ -0.45
PHGDH-228ENST00000641847 ERFEQ4G0M1 354 aa12.27□□□□□ -0.45
PHGDH-228ENST00000641847 TRIM35Q9UPQ4 493 aa12.27□□□□□ -0.45
PHGDH-228ENST00000641847 VIRMAQ69YN4 1812 aaKnown RBP12.27□□□□□ -0.45
PHGDH-228ENST00000641847 ADAMTS7Q9UKP4 1686 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 TMEM88BA6NKF7 163 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 TM4SF1P30408 202 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 MAP2K1Q02750 393 aaPredicted RBP12.26□□□□□ -0.45
PHGDH-228ENST00000641847 AKAP4Q5JQC9 854 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 C1orf141Q5JVX7 400 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 C2CD5Q86YS7 1000 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 WWC1Q8IX03 1113 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 ZNF521Q96K83 1311 aa12.26□□□□□ -0.45
PHGDH-228ENST00000641847 CCDC85CA6NKD9 419 aa12.25□□□□□ -0.45
PHGDH-228ENST00000641847 POTECB2RU33 542 aa12.25□□□□□ -0.45
PHGDH-228ENST00000641847 VEGFBP49765 207 aa12.25□□□□□ -0.45
PHGDH-228ENST00000641847 LDHDQ86WU2 507 aa12.25□□□□□ -0.45
PHGDH-228ENST00000641847 RTF1Q92541 710 aaKnown RBP12.25□□□□□ -0.45
PHGDH-228ENST00000641847 BEGAINQ9BUH8 593 aa12.25□□□□□ -0.45
PHGDH-228ENST00000641847 WBP1LQ9NX94 342 aa12.25□□□□□ -0.45
PHGDH-228ENST00000641847 PDZRN3Q9UPQ7 1066 aa12.25□□□□□ -0.45
PHGDH-228ENST00000641847 GNAT3A8MTJ3 354 aa12.24□□□□□ -0.45
PHGDH-228ENST00000641847 SBF1O95248 1867 aa12.24□□□□□ -0.45
PHGDH-228ENST00000641847 USPL1Q5W0Q7 1092 aa12.24□□□□□ -0.45
PHGDH-228ENST00000641847 SCN11AQ9UI33 1791 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms