RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 NSD3Q9BZ95 1437 aa5.96□□□□□ -1.45
SCN1A-218ENST00000640036 GNAI2P04899 355 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 SLC4A2P04920 1241 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 GPS2Q13227 327 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 SPOUT1Q5T280 376 aaKnown RBP5.96□□□□□ -1.46
SCN1A-218ENST00000640036 DCAF15Q66K64 600 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 USP48Q86UV5 1035 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 ORAI2Q96SN7 254 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 ERFEQ4G0M1 354 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 TRIM22Q8IYM9 498 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 MYD88Q99836 296 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 LBHD1Q9BQE6 289 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-218ENST00000640036 RAPGEF6Q8TEU7 1601 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 RCAN3Q9UKA8 241 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 CNGA1P29973 690 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 STK11IPQ8N1F8 1099 aa5.96□□□□□ -1.46
SCN1A-218ENST00000640036 DBF4Q9UBU7 674 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-218ENST00000640036 SYCP1Q15431 976 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 ANO2Q9NQ90 1003 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 PIM2Q9P1W9 311 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 TPM3P06753 285 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 SUPT20HL1Q3ZLR7 823 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 PDCL3Q9H2J4 239 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 BMP2KQ9NSY1 1161 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-218ENST00000640036 MAST3O60307 1309 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 ZBTB33Q86T24 672 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 SPINK5Q9NQ38 1064 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-218ENST00000640036 CCDC69A6NI79 296 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 DLGAP5Q15398 846 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 TWISTNBQ3B726 338 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-218ENST00000640036 ZNF428Q96B54 188 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 ATP10BO94823 1461 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 KIAA1107Q9UPP5 1409 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 REC8O95072 547 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 PRKG1Q13976 671 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 NME9Q86XW9 330 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 LRRCC1Q9C099 1032 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 CTNNA3Q9UI47 895 aa5.95□□□□□ -1.46
SCN1A-218ENST00000640036 MINDY4BA8MYZ0 360 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 IQCA1Q86XH1 822 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 CKAP2LQ8IYA6 745 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 CCDC97Q96F63 343 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 DCAF5Q96JK2 942 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 STK25O00506 426 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 OFD1O75665 1012 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 CDR1P51861 262 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 ITSN2Q9NZM3 1697 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 IPO7O95373 1038 aaKnown RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 EN1Q05925 392 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 MTIF3Q9H2K0 278 aaKnown RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 ZRSR2Q15696 482 aaKnown RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 PARP10Q53GL7 1025 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 MPNDQ8N594 471 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 CAGE1Q8TC20 777 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 RNF181Q9P0P0 153 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 GGA1Q9UJY5 639 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 ATP6V1DQ9Y5K8 247 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 MVPQ14764 893 aaKnown RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 GJD4Q96KN9 370 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 ZHX3Q9H4I2 956 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 BRD4O60885 1362 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 TSPYL2Q9H2G4 693 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-218ENST00000640036 CAMSAP2Q08AD1 1489 aa5.94□□□□□ -1.46
SCN1A-218ENST00000640036 KIF4AO95239 1232 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 PSMA5P28066 241 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 NBPF1Q3BBV0 1214 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 ELMSAN1Q6PJG2 1045 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 FERMT2Q96AC1 680 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 DDX11Q96FC9 970 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 CCDC174Q6PII3 467 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 MIER1Q8N108 512 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 SUPT16HQ9Y5B9 1047 aaKnown RBP5.93□□□□□ -1.46
SCN1A-218ENST00000640036 THRAP3Q9Y2W1 955 aaKnown RBP5.93□□□□□ -1.46
SCN1A-218ENST00000640036 CEP170Q5SW79 1584 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 PDE4BQ07343 736 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 WDR97A6NE52 1622 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 CHD1O14646 1710 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 PBRM1Q86U86 1689 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 CC2D2BQ6DHV5 1058 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 NBPF11Q86T75 865 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 NUP133Q8WUM0 1156 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 CRNKL1Q9BZJ0 848 aaKnown RBP5.93□□□□□ -1.46
SCN1A-218ENST00000640036 NAPBQ9H115 298 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 MAGI2Q86UL8 1455 aa5.93□□□□□ -1.46
SCN1A-218ENST00000640036 CCDC117Q8IWD4 279 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-218ENST00000640036 M0QZ92 97 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 TTLL6Q8N841 843 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 SLC10A4Q96EP9 437 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 NOS1P29475 1434 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 APBB1IPQ7Z5R6 666 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-218ENST00000640036 ILDR1Q86SU0 546 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-218ENST00000640036 DZIP1LQ8IYY4 767 aaKnown RBP5.92□□□□□ -1.46
SCN1A-218ENST00000640036 DUOX2Q9NRD8 1548 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 UFL1O94874 794 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 CCDC93Q567U6 631 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 FAM200AQ8TCP9 573 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 AS3MTQ9HBK9 375 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 GOLGA6L3A6NEY3 463 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 CCDC150Q8NCX0 1101 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 SEPT11Q9NVA2 429 aaKnown RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms