RNA–Protein interactions for RNA: ENST00000636780.1

CLN5-216, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 5

Gene CLN5, Length 2,683 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-216ENST00000636780 UPF3BQ9BZI7 483 aaKnown RBP23.16■■□□□ 1.3
CLN5-216ENST00000636780 NEK4P51957 841 aa23.16■■□□□ 1.3
CLN5-216ENST00000636780 SSH3Q8TE77 659 aa23.16■■□□□ 1.3
CLN5-216ENST00000636780 OSBPL3Q9H4L5 887 aa23.16■■□□□ 1.3
CLN5-216ENST00000636780 FAM208AQ9UK61 1670 aaKnown RBP23.15■■□□□ 1.3
CLN5-216ENST00000636780 CHMLP26374 656 aa23.15■■□□□ 1.3
CLN5-216ENST00000636780 RABEP1Q15276 862 aa23.15■■□□□ 1.3
CLN5-216ENST00000636780 KLHDC4Q8TBB5 520 aa23.15■■□□□ 1.3
CLN5-216ENST00000636780 RHPN1Q8TCX5 695 aa23.15■■□□□ 1.3
CLN5-216ENST00000636780 ESYT1Q9BSJ8 1104 aa23.15■■□□□ 1.3
CLN5-216ENST00000636780 C19orf44Q9H6X5 657 aa23.15■■□□□ 1.3
CLN5-216ENST00000636780 OS9Q13438 667 aaPredicted RBP23.14■■□□□ 1.29
CLN5-216ENST00000636780 C9orf78Q9NZ63 289 aaPredicted RBP23.14■■□□□ 1.29
CLN5-216ENST00000636780 XRCC6P12956 609 aaKnown RBP eCLIP23.13■■□□□ 1.29
CLN5-216ENST00000636780 FOXD4L6Q3SYB3 417 aaPredicted RBP23.13■■□□□ 1.29
CLN5-216ENST00000636780 FOXD4L3Q6VB84 417 aaPredicted RBP23.13■■□□□ 1.29
CLN5-216ENST00000636780 ERBB3P21860 1342 aa23.13■■□□□ 1.29
CLN5-216ENST00000636780 REC8O95072 547 aa23.12■■□□□ 1.29
CLN5-216ENST00000636780 ATF3P18847 181 aa23.12■■□□□ 1.29
CLN5-216ENST00000636780 DBF4Q9UBU7 674 aaPredicted RBP23.12■■□□□ 1.29
CLN5-216ENST00000636780 AMOTQ4VCS5 1084 aa23.11■■□□□ 1.29
CLN5-216ENST00000636780 SIL1Q9H173 461 aa23.11■■□□□ 1.29
CLN5-216ENST00000636780 C1orf167Q5SNV9 1468 aa23.11■■□□□ 1.29
CLN5-216ENST00000636780 BABAM1Q9NWV8 329 aa23.11■■□□□ 1.29
CLN5-216ENST00000636780 TMEM94Q12767 1356 aa23.11■■□□□ 1.29
CLN5-216ENST00000636780 DDX54Q8TDD1 881 aaKnown RBP23.1■■□□□ 1.29
CLN5-216ENST00000636780 RAPGEF4Q8WZA2 1011 aa23.1■■□□□ 1.29
CLN5-216ENST00000636780 POLA2Q14181 598 aa23.09■■□□□ 1.29
CLN5-216ENST00000636780 GAS2L3Q86XJ1 694 aa23.09■■□□□ 1.29
CLN5-216ENST00000636780 USP16Q9Y5T5 823 aa23.09■■□□□ 1.29
CLN5-216ENST00000636780 SPG7Q9UQ90 795 aa23.08■■□□□ 1.29
CLN5-216ENST00000636780 MCTP1Q6DN14 999 aa23.08■■□□□ 1.29
CLN5-216ENST00000636780 PI4K2BQ8TCG2 481 aa23.08■■□□□ 1.29
CLN5-216ENST00000636780 RGPD5Q99666 1765 aa23.08■■□□□ 1.28
CLN5-216ENST00000636780 GOLGA6L3A6NEY3 463 aa23.07■■□□□ 1.28
CLN5-216ENST00000636780 PDIA6Q15084 440 aa23.07■■□□□ 1.28
CLN5-216ENST00000636780 CWC27Q6UX04 472 aaKnown RBP23.07■■□□□ 1.28
CLN5-216ENST00000636780 ZNF496Q96IT1 587 aaPredicted RBP23.07■■□□□ 1.28
CLN5-216ENST00000636780 CPA1P15085 419 aa23.07■■□□□ 1.28
CLN5-216ENST00000636780 KAZALD1Q96I82 304 aa23.07■■□□□ 1.28
CLN5-216ENST00000636780 SUCLG2Q96I99 432 aa23.07■■□□□ 1.28
CLN5-216ENST00000636780 TPRNQ4KMQ1 711 aa23.06■■□□□ 1.28
CLN5-216ENST00000636780 ZNF790Q6PG37 636 aa23.06■■□□□ 1.28
CLN5-216ENST00000636780 BAG4O95429 457 aaKnown RBP23.05■■□□□ 1.28
CLN5-216ENST00000636780 KSR2Q6VAB6 950 aa23.05■■□□□ 1.28
CLN5-216ENST00000636780 STAP2Q9UGK3 403 aa23.05■■□□□ 1.28
CLN5-216ENST00000636780 ST18O60284 1047 aa23.05■■□□□ 1.28
CLN5-216ENST00000636780 NCLP19338 710 aaKnown RBP23.05■■□□□ 1.28
CLN5-216ENST00000636780 ZDHHC9Q9Y397 364 aa23.05■■□□□ 1.28
CLN5-216ENST00000636780 ADAMTSL3P82987 1691 aa23.05■■□□□ 1.28
CLN5-216ENST00000636780 DDX11L8A8MPP1 907 aa23.05■■□□□ 1.28
CLN5-216ENST00000636780 CCDC8Q9H0W5 538 aaPredicted RBP23.05■■□□□ 1.28
CLN5-216ENST00000636780 BICC1Q9H694 974 aaKnown RBP23.05■■□□□ 1.28
CLN5-216ENST00000636780 CYP27B1O15528 508 aa23.04■■□□□ 1.28
CLN5-216ENST00000636780 COPS6Q7L5N1 327 aa23.04■■□□□ 1.28
CLN5-216ENST00000636780 RIC3Q7Z5B4 369 aa23.04■■□□□ 1.28
CLN5-216ENST00000636780 TMX3Q96JJ7 454 aa23.04■■□□□ 1.28
CLN5-216ENST00000636780 GBP4Q96PP9 640 aa23.04■■□□□ 1.28
CLN5-216ENST00000636780 IGKV5-2P06315 115 aa23.04■■□□□ 1.28
CLN5-216ENST00000636780 XAGE3Q8WTP9 111 aa23.04■■□□□ 1.28
CLN5-216ENST00000636780 CCDC9Q9Y3X0 531 aaKnown RBP23.04■■□□□ 1.28
CLN5-216ENST00000636780 KIF1BPQ96EK5 621 aa23.03■■□□□ 1.28
CLN5-216ENST00000636780 TLR7Q9NYK1 1049 aaKnown RBP23.03■■□□□ 1.28
CLN5-216ENST00000636780 CIZ1Q9ULV3 898 aaPredicted RBP23.03■■□□□ 1.28
CLN5-216ENST00000636780 ATP5J2-PTCD1G3V325 749 aa23.03■■□□□ 1.28
CLN5-216ENST00000636780 PTCD1O75127 700 aaKnown RBP23.03■■□□□ 1.28
CLN5-216ENST00000636780 PHKG2P15735 406 aa23.03■■□□□ 1.28
CLN5-216ENST00000636780 EPHA10Q5JZY3 1008 aa23.03■■□□□ 1.28
CLN5-216ENST00000636780 NDUFB9Q9Y6M9 179 aa23.02■■□□□ 1.28
CLN5-216ENST00000636780 NPHP3Q7Z494 1330 aa23.02■■□□□ 1.27
CLN5-216ENST00000636780 MYD88Q99836 296 aa23.01■■□□□ 1.27
CLN5-216ENST00000636780 SLC52A2Q9HAB3 445 aa23.01■■□□□ 1.27
CLN5-216ENST00000636780 TATP17735 454 aaPredicted RBP23.01■■□□□ 1.27
CLN5-216ENST00000636780 COL9A3Q14050 684 aaPredicted RBP23.01■■□□□ 1.27
CLN5-216ENST00000636780 RASEFQ8IZ41 740 aa23.01■■□□□ 1.27
CLN5-216ENST00000636780 MED1Q15648 1581 aaPredicted RBP23■■□□□ 1.27
CLN5-216ENST00000636780 FSD2A1L4K1 749 aa23■■□□□ 1.27
CLN5-216ENST00000636780 HOXB7P09629 217 aa23■■□□□ 1.27
CLN5-216ENST00000636780 USP54Q70EL1 1684 aa23■■□□□ 1.27
CLN5-216ENST00000636780 MEGF6O75095 1541 aa23■■□□□ 1.27
CLN5-216ENST00000636780 KDM6AO15550 1401 aaPredicted RBP22.99■■□□□ 1.27
CLN5-216ENST00000636780 DDX49Q9Y6V7 483 aaKnown RBP22.99■■□□□ 1.27
CLN5-216ENST00000636780 ZNF142P52746 1687 aaPredicted RBP22.99■■□□□ 1.27
CLN5-216ENST00000636780 CHGBP05060 677 aa22.99■■□□□ 1.27
CLN5-216ENST00000636780 AACSQ86V21 672 aa22.99■■□□□ 1.27
CLN5-216ENST00000636780 EDC3Q96F86 508 aaKnown RBP22.99■■□□□ 1.27
CLN5-216ENST00000636780 GRM8O00222 908 aa22.98■■□□□ 1.27
CLN5-216ENST00000636780 SASH1O94885 1247 aa22.98■■□□□ 1.27
CLN5-216ENST00000636780 DDX21Q9NR30 783 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLN5-216ENST00000636780 RAB11FIP3O75154 756 aa22.98■■□□□ 1.27
CLN5-216ENST00000636780 PRPF40AO75400 957 aaKnown RBP22.97■■□□□ 1.27
CLN5-216ENST00000636780 SLIT3O75094 1523 aa22.97■■□□□ 1.27
CLN5-216ENST00000636780 EAF2Q96CJ1 260 aaPredicted RBP22.97■■□□□ 1.27
CLN5-216ENST00000636780 RBM27Q9P2N5 1060 aaKnown RBP22.97■■□□□ 1.27
CLN5-216ENST00000636780 KDM3BQ7LBC6 1761 aa22.97■■□□□ 1.27
CLN5-216ENST00000636780 PTH1RQ03431 593 aa22.96■■□□□ 1.27
CLN5-216ENST00000636780 NSFL1CQ9UNZ2 370 aaKnown RBP22.96■■□□□ 1.27
CLN5-216ENST00000636780 HEG1Q9ULI3 1381 aa22.96■■□□□ 1.27
CLN5-216ENST00000636780 HYPKQ9NX55 129 aa22.96■■□□□ 1.27
CLN5-216ENST00000636780 MST1RQ04912 1400 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms