RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 ADCY9O60503 1353 aa20.76■□□□□ 0.91
LINC00339-209ENST00000635450 ZNF316A6NFI3 1004 aaPredicted RBP20.76■□□□□ 0.91
LINC00339-209ENST00000635450 U2AF1L5P0DN76 240 aaPredicted RBP20.76■□□□□ 0.91
LINC00339-209ENST00000635450 U2AF1Q01081 240 aaKnown RBP eCLIP20.76■□□□□ 0.91
LINC00339-209ENST00000635450 A0A0G2JLW4 131 aa20.75■□□□□ 0.91
LINC00339-209ENST00000635450 KCNQ3O43525 872 aa20.75■□□□□ 0.91
LINC00339-209ENST00000635450 USPL1Q5W0Q7 1092 aa20.75■□□□□ 0.91
LINC00339-209ENST00000635450 BCORQ6W2J9 1755 aa20.74■□□□□ 0.91
LINC00339-209ENST00000635450 HEG1Q9ULI3 1381 aa20.74■□□□□ 0.91
LINC00339-209ENST00000635450 DPEP1P16444 411 aa20.74■□□□□ 0.91
LINC00339-209ENST00000635450 TEFQ10587 303 aa20.74■□□□□ 0.91
LINC00339-209ENST00000635450 ZNF790Q6PG37 636 aa20.74■□□□□ 0.91
LINC00339-209ENST00000635450 PARP3Q9Y6F1 533 aa20.74■□□□□ 0.91
LINC00339-209ENST00000635450 DLEC1Q9Y238 1755 aa20.74■□□□□ 0.91
LINC00339-209ENST00000635450 TTC5Q8N0Z6 440 aa20.73■□□□□ 0.91
LINC00339-209ENST00000635450 VSIG10Q8N0Z9 540 aa20.73■□□□□ 0.91
LINC00339-209ENST00000635450 BCL2L12Q9HB09 334 aa20.73■□□□□ 0.91
LINC00339-209ENST00000635450 POLRMTO00411 1230 aaKnown RBP20.72■□□□□ 0.91
LINC00339-209ENST00000635450 MCM10Q7L590 875 aa20.72■□□□□ 0.91
LINC00339-209ENST00000635450 ANKRD31Q8N7Z5 1873 aa20.72■□□□□ 0.91
LINC00339-209ENST00000635450 KDM3BQ7LBC6 1761 aa20.72■□□□□ 0.91
LINC00339-209ENST00000635450 KCNA3P22001 575 aa20.71■□□□□ 0.91
LINC00339-209ENST00000635450 CANXP27824 592 aaKnown RBP20.71■□□□□ 0.91
LINC00339-209ENST00000635450 DCTN1Q14203 1278 aa20.71■□□□□ 0.91
LINC00339-209ENST00000635450 MYBBP1AQ9BQG0 1328 aaKnown RBP20.71■□□□□ 0.91
LINC00339-209ENST00000635450 LAMB4A4D0S4 1761 aa20.7■□□□□ 0.9
LINC00339-209ENST00000635450 TM4SF1P30408 202 aa20.7■□□□□ 0.9
LINC00339-209ENST00000635450 TGFB2P61812 414 aa20.7■□□□□ 0.9
LINC00339-209ENST00000635450 NARFQ9UHQ1 456 aa20.7■□□□□ 0.9
LINC00339-209ENST00000635450 BCS1LQ9Y276 419 aa20.7■□□□□ 0.9
LINC00339-209ENST00000635450 CARMIL3Q8ND23 1372 aa20.7■□□□□ 0.9
LINC00339-209ENST00000635450 COL11A2P13942 1736 aaPredicted RBP20.7■□□□□ 0.9
LINC00339-209ENST00000635450 ZPR1O75312 459 aa20.69■□□□□ 0.9
LINC00339-209ENST00000635450 FCHSD2O94868 740 aa20.69■□□□□ 0.9
LINC00339-209ENST00000635450 NFIXQ14938 502 aa20.69■□□□□ 0.9
LINC00339-209ENST00000635450 PRAMEF22A3QJZ6 481 aa20.68■□□□□ 0.9
LINC00339-209ENST00000635450 CHRNA5P30532 468 aa20.68■□□□□ 0.9
LINC00339-209ENST00000635450 BTBD11A6QL63 1104 aa20.67■□□□□ 0.9
LINC00339-209ENST00000635450 NEFMP07197 916 aa20.67■□□□□ 0.9
LINC00339-209ENST00000635450 EIF5P55010 431 aaKnown RBP20.67■□□□□ 0.9
LINC00339-209ENST00000635450 PIP4K2AP48426 406 aaPredicted RBP20.66■□□□□ 0.9
LINC00339-209ENST00000635450 ZNF526Q8TF50 670 aaPredicted RBP20.66■□□□□ 0.9
LINC00339-209ENST00000635450 FMNL2Q96PY5 1086 aa20.66■□□□□ 0.9
LINC00339-209ENST00000635450 PRKRIP1Q9H875 184 aaPredicted RBP20.66■□□□□ 0.9
LINC00339-209ENST00000635450 SBF1O95248 1867 aa20.66■□□□□ 0.9
LINC00339-209ENST00000635450 GIGYF1O75420 1035 aaPredicted RBP20.65■□□□□ 0.9
LINC00339-209ENST00000635450 STARD3NLO95772 234 aa20.65■□□□□ 0.9
LINC00339-209ENST00000635450 A1BGP04217 495 aa20.65■□□□□ 0.9
LINC00339-209ENST00000635450 C1QTNF8P60827 252 aa20.65■□□□□ 0.9
LINC00339-209ENST00000635450 ZNF330Q9Y3S2 320 aaPredicted RBP20.65■□□□□ 0.9
LINC00339-209ENST00000635450 CACNA1SQ13698 1873 aa20.64■□□□□ 0.9
LINC00339-209ENST00000635450 PNNQ9H307 717 aaKnown RBP20.64■□□□□ 0.89
LINC00339-209ENST00000635450 BICDL1Q6ZP65 573 aa20.63■□□□□ 0.89
LINC00339-209ENST00000635450 PLEKHF1Q96S99 279 aa20.62■□□□□ 0.89
LINC00339-209ENST00000635450 TBC1D2BQ9UPU7 963 aa20.62■□□□□ 0.89
LINC00339-209ENST00000635450 USP16Q9Y5T5 823 aa20.62■□□□□ 0.89
LINC00339-209ENST00000635450 TBC1D9BQ66K14 1250 aa20.61■□□□□ 0.89
LINC00339-209ENST00000635450 RTF1Q92541 710 aaKnown RBP20.61■□□□□ 0.89
LINC00339-209ENST00000635450 THUMPD2Q9BTF0 503 aaKnown RBP20.61■□□□□ 0.89
LINC00339-209ENST00000635450 MIS18AQ9NYP9 233 aa20.61■□□□□ 0.89
LINC00339-209ENST00000635450 SERPINB2P05120 415 aa20.6■□□□□ 0.89
LINC00339-209ENST00000635450 CCDC88AQ3V6T2 1871 aa20.6■□□□□ 0.89
LINC00339-209ENST00000635450 IL6STP40189 918 aaPredicted RBP20.59■□□□□ 0.89
LINC00339-209ENST00000635450 ARHGAP27Q6ZUM4 889 aa20.59■□□□□ 0.89
LINC00339-209ENST00000635450 TEX13AQ9BXU3 409 aaPredicted RBP20.59■□□□□ 0.89
LINC00339-209ENST00000635450 PIM2Q9P1W9 311 aa20.59■□□□□ 0.89
LINC00339-209ENST00000635450 MAPK8IP3Q9UPT6 1336 aa20.58■□□□□ 0.89
LINC00339-209ENST00000635450 CAMTA2O94983 1202 aa20.58■□□□□ 0.89
LINC00339-209ENST00000635450 CCDC24Q8N4L8 307 aa20.58■□□□□ 0.89
LINC00339-209ENST00000635450 GPBP1L1Q9HC44 474 aaPredicted RBP20.58■□□□□ 0.89
LINC00339-209ENST00000635450 SENP3-EIF4A1A0A087X0R7 540 aa20.57■□□□□ 0.88
LINC00339-209ENST00000635450 WDR43Q15061 677 aaKnown RBP eCLIP20.57■□□□□ 0.88
LINC00339-209ENST00000635450 DALRD3Q5D0E6 543 aaKnown RBP20.57■□□□□ 0.88
LINC00339-209ENST00000635450 TIAM2Q8IVF5 1701 aa20.57■□□□□ 0.88
LINC00339-209ENST00000635450 A0A087WZG4 1122 aa20.56■□□□□ 0.88
LINC00339-209ENST00000635450 NBPF26B4DH59 902 aa20.56■□□□□ 0.88
LINC00339-209ENST00000635450 HTATSF1O43719 755 aaKnown RBP20.56■□□□□ 0.88
LINC00339-209ENST00000635450 NBPF10Q6P3W6 841 aaKnown RBP20.56■□□□□ 0.88
LINC00339-209ENST00000635450 NBPF15Q8N660 670 aa20.56■□□□□ 0.88
LINC00339-209ENST00000635450 ARFGEF2Q9Y6D5 1785 aa20.55■□□□□ 0.88
LINC00339-209ENST00000635450 NFE2L2Q16236 605 aa20.55■□□□□ 0.88
LINC00339-209ENST00000635450 CEP350Q5VT06 3117 aa20.55■□□□□ 0.88
LINC00339-209ENST00000635450 ANP32CO43423 234 aa20.54■□□□□ 0.88
LINC00339-209ENST00000635450 SNRPA1P09661 255 aaKnown RBP20.54■□□□□ 0.88
LINC00339-209ENST00000635450 TAF7Q15545 349 aaPredicted RBP20.54■□□□□ 0.88
LINC00339-209ENST00000635450 PRR5LQ6MZQ0 368 aa20.54■□□□□ 0.88
LINC00339-209ENST00000635450 DZIP3Q86Y13 1208 aaKnown RBP20.54■□□□□ 0.88
LINC00339-209ENST00000635450 NUP98P52948 1817 aa20.53■□□□□ 0.88
LINC00339-209ENST00000635450 RASSF7Q02833 373 aa20.53■□□□□ 0.88
LINC00339-209ENST00000635450 SLX4Q8IY92 1834 aa20.53■□□□□ 0.88
LINC00339-209ENST00000635450 FER1L6Q2WGJ9 1857 aa20.52■□□□□ 0.88
LINC00339-209ENST00000635450 TNRC6CQ9HCJ0 1690 aaKnown RBP20.52■□□□□ 0.88
LINC00339-209ENST00000635450 KIF3CO14782 793 aa20.52■□□□□ 0.88
LINC00339-209ENST00000635450 PRELPP51888 382 aa20.52■□□□□ 0.88
LINC00339-209ENST00000635450 C9orf131Q5VYM1 1079 aa20.52■□□□□ 0.88
LINC00339-209ENST00000635450 C2CD5Q86YS7 1000 aa20.52■□□□□ 0.88
LINC00339-209ENST00000635450 EIF4A1P60842 406 aaKnown RBP20.48■□□□□ 0.87
LINC00339-209ENST00000635450 NMRK2Q9NPI5 230 aa20.48■□□□□ 0.87
LINC00339-209ENST00000635450 RNF181Q9P0P0 153 aa20.48■□□□□ 0.87
LINC00339-209ENST00000635450 DICER1Q9UPY3 1922 aaKnown RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms