RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 TRAPPC3LQ5T215 181 aa19.26■□□□□ 0.67
PNKP-221ENST00000627317 ZNF790Q6PG37 636 aa19.26■□□□□ 0.67
PNKP-221ENST00000627317 NLGN2Q8NFZ4 835 aa19.26■□□□□ 0.67
PNKP-221ENST00000627317 TRIM35Q9UPQ4 493 aa19.26■□□□□ 0.67
PNKP-221ENST00000627317 ZNF496Q96IT1 587 aaPredicted RBP19.25■□□□□ 0.67
PNKP-221ENST00000627317 CCDC87Q9NVE4 849 aa19.25■□□□□ 0.67
PNKP-221ENST00000627317 SOS1Q07889 1333 aaPredicted RBP19.25■□□□□ 0.67
PNKP-221ENST00000627317 GYS1P13807 737 aa19.24■□□□□ 0.67
PNKP-221ENST00000627317 HEG1Q9ULI3 1381 aa19.23■□□□□ 0.67
PNKP-221ENST00000627317 CALD1Q05682 793 aaKnown RBP19.23■□□□□ 0.67
PNKP-221ENST00000627317 NGEFQ8N5V2 710 aa19.23■□□□□ 0.67
PNKP-221ENST00000627317 SALL2Q9Y467 1007 aaPredicted RBP19.23■□□□□ 0.67
PNKP-221ENST00000627317 USP42Q9H9J4 1324 aaKnown RBP19.23■□□□□ 0.67
PNKP-221ENST00000627317 BTBD11A6QL63 1104 aa19.22■□□□□ 0.67
PNKP-221ENST00000627317 TAF7Q15545 349 aaPredicted RBP19.22■□□□□ 0.67
PNKP-221ENST00000627317 CCDC27Q2M243 656 aa19.22■□□□□ 0.67
PNKP-221ENST00000627317 NCBP3Q53F19 620 aaKnown RBP19.22■□□□□ 0.67
PNKP-221ENST00000627317 TTC5Q8N0Z6 440 aa19.22■□□□□ 0.67
PNKP-221ENST00000627317 CD2APQ9Y5K6 639 aa19.22■□□□□ 0.67
PNKP-221ENST00000627317 KCNQ3O43525 872 aa19.21■□□□□ 0.67
PNKP-221ENST00000627317 ZBTB1Q9Y2K1 713 aa19.21■□□□□ 0.67
PNKP-221ENST00000627317 MMP10P09238 476 aa19.2■□□□□ 0.66
PNKP-221ENST00000627317 RFC4P35249 363 aa19.2■□□□□ 0.66
PNKP-221ENST00000627317 KLHL34Q8N239 644 aa19.2■□□□□ 0.66
PNKP-221ENST00000627317 NLGN1Q8N2Q7 840 aa19.2■□□□□ 0.66
PNKP-221ENST00000627317 SRP68Q9UHB9 627 aaKnown RBP19.2■□□□□ 0.66
PNKP-221ENST00000627317 C10orf71Q711Q0 1435 aa19.19■□□□□ 0.66
PNKP-221ENST00000627317 WWC1Q8IX03 1113 aa19.19■□□□□ 0.66
PNKP-221ENST00000627317 COL15A1P39059 1388 aa19.19■□□□□ 0.66
PNKP-221ENST00000627317 FMNL2Q96PY5 1086 aa19.18■□□□□ 0.66
PNKP-221ENST00000627317 TSPYL4Q9UJ04 414 aa19.18■□□□□ 0.66
PNKP-221ENST00000627317 LAS1LQ9Y4W2 734 aaKnown RBP19.18■□□□□ 0.66
PNKP-221ENST00000627317 KIAA1551Q9HCM1 1747 aa19.17■□□□□ 0.66
PNKP-221ENST00000627317 KDM3BQ7LBC6 1761 aa19.17■□□□□ 0.66
PNKP-221ENST00000627317 KIF13BQ9NQT8 1826 aa19.17■□□□□ 0.66
PNKP-221ENST00000627317 FKBP8Q14318 412 aa19.17■□□□□ 0.66
PNKP-221ENST00000627317 MIS18AQ9NYP9 233 aa19.17■□□□□ 0.66
PNKP-221ENST00000627317 EIF5P55010 431 aaKnown RBP19.16■□□□□ 0.66
PNKP-221ENST00000627317 BABAM1Q9NWV8 329 aa19.16■□□□□ 0.66
PNKP-221ENST00000627317 DCAF8L1A6NGE4 600 aa19.15■□□□□ 0.66
PNKP-221ENST00000627317 STARD3NLO95772 234 aa19.15■□□□□ 0.66
PNKP-221ENST00000627317 YBX3P16989 372 aaKnown RBP eCLIP19.15■□□□□ 0.66
PNKP-221ENST00000627317 DDR1Q08345 913 aa19.15■□□□□ 0.66
PNKP-221ENST00000627317 TEX13AQ9BXU3 409 aaPredicted RBP19.15■□□□□ 0.66
PNKP-221ENST00000627317 BCL2L12Q9HB09 334 aa19.15■□□□□ 0.66
PNKP-221ENST00000627317 IFT57Q9NWB7 429 aa19.15■□□□□ 0.66
PNKP-221ENST00000627317 PXDNLA1KZ92 1463 aa19.15■□□□□ 0.66
PNKP-221ENST00000627317 GNAI1P63096 354 aa19.14■□□□□ 0.65
PNKP-221ENST00000627317 HNRNPUQ00839 825 aaKnown RBP eCLIP19.14■□□□□ 0.65
PNKP-221ENST00000627317 CFAP44Q96MT7 982 aa19.14■□□□□ 0.65
PNKP-221ENST00000627317 NARFQ9UHQ1 456 aa19.14■□□□□ 0.65
PNKP-221ENST00000627317 IL16Q14005 1332 aa19.14■□□□□ 0.65
PNKP-221ENST00000627317 SCN7AQ01118 1682 aa19.14■□□□□ 0.65
PNKP-221ENST00000627317 PRAMEF22A3QJZ6 481 aa19.13■□□□□ 0.65
PNKP-221ENST00000627317 CHL1O00533 1208 aa19.13■□□□□ 0.65
PNKP-221ENST00000627317 WDR63Q8IWG1 891 aa19.13■□□□□ 0.65
PNKP-221ENST00000627317 CANXP27824 592 aaKnown RBP19.12■□□□□ 0.65
PNKP-221ENST00000627317 TM4SF1P30408 202 aa19.12■□□□□ 0.65
PNKP-221ENST00000627317 USPL1Q5W0Q7 1092 aa19.12■□□□□ 0.65
PNKP-221ENST00000627317 POLRMTO00411 1230 aaKnown RBP19.11■□□□□ 0.65
PNKP-221ENST00000627317 YY1P25490 414 aa19.11■□□□□ 0.65
PNKP-221ENST00000627317 GPR162Q16538 588 aa19.11■□□□□ 0.65
PNKP-221ENST00000627317 USP16Q9Y5T5 823 aa19.11■□□□□ 0.65
PNKP-221ENST00000627317 ZNF521Q96K83 1311 aa19.1■□□□□ 0.65
PNKP-221ENST00000627317 A1BGP04217 495 aa19.1■□□□□ 0.65
PNKP-221ENST00000627317 SNRPA1P09661 255 aaKnown RBP19.1■□□□□ 0.65
PNKP-221ENST00000627317 ZNF853P0CG23 659 aa19.1■□□□□ 0.65
PNKP-221ENST00000627317 IL6STP40189 918 aaPredicted RBP19.1■□□□□ 0.65
PNKP-221ENST00000627317 MBIPQ9NS73 344 aa19.1■□□□□ 0.65
PNKP-221ENST00000627317 NRXN2Q9P2S2 1712 aa19.1■□□□□ 0.65
PNKP-221ENST00000627317 ZPR1O75312 459 aa19.09■□□□□ 0.65
PNKP-221ENST00000627317 EIF4A1P60842 406 aaKnown RBP19.09■□□□□ 0.65
PNKP-221ENST00000627317 PARP3Q9Y6F1 533 aa19.09■□□□□ 0.65
PNKP-221ENST00000627317 LAMB4A4D0S4 1761 aa19.09■□□□□ 0.65
PNKP-221ENST00000627317 NFIXQ14938 502 aa19.08■□□□□ 0.64
PNKP-221ENST00000627317 GOLGA2Q08379 1002 aa19.07■□□□□ 0.64
PNKP-221ENST00000627317 TSR2Q969E8 191 aaKnown RBP19.07■□□□□ 0.64
PNKP-221ENST00000627317 MYH16Q9H6N6 1097 aa19.07■□□□□ 0.64
PNKP-221ENST00000627317 BCORQ6W2J9 1755 aa19.06■□□□□ 0.64
PNKP-221ENST00000627317 A0A087WZG4 1122 aa19.06■□□□□ 0.64
PNKP-221ENST00000627317 NBPF26B4DH59 902 aa19.06■□□□□ 0.64
PNKP-221ENST00000627317 TGFB2P61812 414 aa19.06■□□□□ 0.64
PNKP-221ENST00000627317 NBPF10Q6P3W6 841 aaKnown RBP19.06■□□□□ 0.64
PNKP-221ENST00000627317 PELP1Q8IZL8 1130 aaKnown RBP19.06■□□□□ 0.64
PNKP-221ENST00000627317 NBPF15Q8N660 670 aa19.06■□□□□ 0.64
PNKP-221ENST00000627317 FANCIQ9NVI1 1328 aa19.05■□□□□ 0.64
PNKP-221ENST00000627317 GIGYF1O75420 1035 aaPredicted RBP19.05■□□□□ 0.64
PNKP-221ENST00000627317 CAMTA2O94983 1202 aa19.05■□□□□ 0.64
PNKP-221ENST00000627317 E9PSI1 815 aa19.04■□□□□ 0.64
PNKP-221ENST00000627317 GRIN3BO60391 1043 aa19.04■□□□□ 0.64
PNKP-221ENST00000627317 KCNA3P22001 575 aa19.04■□□□□ 0.64
PNKP-221ENST00000627317 PIP4K2AP48426 406 aaPredicted RBP19.04■□□□□ 0.64
PNKP-221ENST00000627317 N4BP2Q86UW6 1770 aaPredicted RBP19.04■□□□□ 0.64
PNKP-221ENST00000627317 ZBED9Q6R2W3 1325 aa19.03■□□□□ 0.64
PNKP-221ENST00000627317 DPEP1P16444 411 aa19.03■□□□□ 0.64
PNKP-221ENST00000627317 KRT24Q2M2I5 525 aa19.03■□□□□ 0.64
PNKP-221ENST00000627317 SPINK5Q9NQ38 1064 aaPredicted RBP19.03■□□□□ 0.64
PNKP-221ENST00000627317 TBC1D2BQ9UPU7 963 aa19.03■□□□□ 0.64
PNKP-221ENST00000627317 BRCA1P38398 1863 aaKnown RBP19.03■□□□□ 0.64
PNKP-221ENST00000627317 A0A0G2JLW4 131 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms