RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 USP42Q9H9J4 1324 aaKnown RBP19.7■□□□□ 0.74
LINC00643-205ENST00000623219 HTATSF1O43719 755 aaKnown RBP19.69■□□□□ 0.74
LINC00643-205ENST00000623219 MMP10P09238 476 aa19.69■□□□□ 0.74
LINC00643-205ENST00000623219 GPR162Q16538 588 aa19.68■□□□□ 0.74
LINC00643-205ENST00000623219 BTBD11A6QL63 1104 aa19.67■□□□□ 0.74
LINC00643-205ENST00000623219 ZNF496Q96IT1 587 aaPredicted RBP19.67■□□□□ 0.74
LINC00643-205ENST00000623219 PLEKHF1Q96S99 279 aa19.67■□□□□ 0.74
LINC00643-205ENST00000623219 PNNQ9H307 717 aaKnown RBP19.67■□□□□ 0.74
LINC00643-205ENST00000623219 ZBTB1Q9Y2K1 713 aa19.67■□□□□ 0.74
LINC00643-205ENST00000623219 MCM10Q7L590 875 aa19.66■□□□□ 0.74
LINC00643-205ENST00000623219 FMNL2Q96PY5 1086 aa19.66■□□□□ 0.74
LINC00643-205ENST00000623219 PXDNLA1KZ92 1463 aa19.66■□□□□ 0.74
LINC00643-205ENST00000623219 ANKRD31Q8N7Z5 1873 aa19.65■□□□□ 0.74
LINC00643-205ENST00000623219 STARD3NLO95772 234 aa19.65■□□□□ 0.74
LINC00643-205ENST00000623219 PELP1Q8IZL8 1130 aaKnown RBP19.65■□□□□ 0.74
LINC00643-205ENST00000623219 TEX13AQ9BXU3 409 aaPredicted RBP19.65■□□□□ 0.74
LINC00643-205ENST00000623219 SRP68Q9UHB9 627 aaKnown RBP19.65■□□□□ 0.74
LINC00643-205ENST00000623219 MAPK8IP3Q9UPT6 1336 aa19.65■□□□□ 0.74
LINC00643-205ENST00000623219 CACNA1SQ13698 1873 aa19.64■□□□□ 0.73
LINC00643-205ENST00000623219 DCTN1Q14203 1278 aa19.63■□□□□ 0.73
LINC00643-205ENST00000623219 PARP3Q9Y6F1 533 aa19.63■□□□□ 0.73
LINC00643-205ENST00000623219 NUP98P52948 1817 aa19.62■□□□□ 0.73
LINC00643-205ENST00000623219 ZPR1O75312 459 aa19.62■□□□□ 0.73
LINC00643-205ENST00000623219 YBX3P16989 372 aaKnown RBP eCLIP19.62■□□□□ 0.73
LINC00643-205ENST00000623219 NFE2L2Q16236 605 aa19.62■□□□□ 0.73
LINC00643-205ENST00000623219 FKBP8Q14318 412 aa19.61■□□□□ 0.73
LINC00643-205ENST00000623219 USPL1Q5W0Q7 1092 aa19.61■□□□□ 0.73
LINC00643-205ENST00000623219 NARFQ9UHQ1 456 aa19.61■□□□□ 0.73
LINC00643-205ENST00000623219 ARFGEF2Q9Y6D5 1785 aa19.6■□□□□ 0.73
LINC00643-205ENST00000623219 KCNQ3O43525 872 aa19.6■□□□□ 0.73
LINC00643-205ENST00000623219 GRIN3BO60391 1043 aa19.6■□□□□ 0.73
LINC00643-205ENST00000623219 CANXP27824 592 aaKnown RBP19.6■□□□□ 0.73
LINC00643-205ENST00000623219 COL11A2P13942 1736 aaPredicted RBP19.59■□□□□ 0.73
LINC00643-205ENST00000623219 EIF5P55010 431 aaKnown RBP19.59■□□□□ 0.73
LINC00643-205ENST00000623219 PRKRIP1Q9H875 184 aaPredicted RBP19.59■□□□□ 0.73
LINC00643-205ENST00000623219 A0A087WZG4 1122 aa19.58■□□□□ 0.72
LINC00643-205ENST00000623219 TGFB2P61812 414 aa19.58■□□□□ 0.72
LINC00643-205ENST00000623219 DDR1Q08345 913 aa19.58■□□□□ 0.72
LINC00643-205ENST00000623219 TAF7Q15545 349 aaPredicted RBP19.58■□□□□ 0.72
LINC00643-205ENST00000623219 SBF1O95248 1867 aa19.58■□□□□ 0.72
LINC00643-205ENST00000623219 IL6STP40189 918 aaPredicted RBP19.57■□□□□ 0.72
LINC00643-205ENST00000623219 CCDC88AQ3V6T2 1871 aa19.56■□□□□ 0.72
LINC00643-205ENST00000623219 POLRMTO00411 1230 aaKnown RBP19.56■□□□□ 0.72
LINC00643-205ENST00000623219 SNRPA1P09661 255 aaKnown RBP19.56■□□□□ 0.72
LINC00643-205ENST00000623219 TM4SF1P30408 202 aa19.56■□□□□ 0.72
LINC00643-205ENST00000623219 PNISRQ8TF01 805 aaKnown RBP19.56■□□□□ 0.72
LINC00643-205ENST00000623219 ANKRD36CQ5JPF3 1778 aa19.56■□□□□ 0.72
LINC00643-205ENST00000623219 WDR43Q15061 677 aaKnown RBP eCLIP19.55■□□□□ 0.72
LINC00643-205ENST00000623219 BCL2L12Q9HB09 334 aa19.54■□□□□ 0.72
LINC00643-205ENST00000623219 PRAMEF22A3QJZ6 481 aa19.53■□□□□ 0.72
LINC00643-205ENST00000623219 A1BGP04217 495 aa19.53■□□□□ 0.72
LINC00643-205ENST00000623219 LMOD3Q0VAK6 560 aa19.53■□□□□ 0.72
LINC00643-205ENST00000623219 NFIXQ14938 502 aa19.53■□□□□ 0.72
LINC00643-205ENST00000623219 NPM2Q86SE8 214 aaKnown RBP19.53■□□□□ 0.72
LINC00643-205ENST00000623219 ZNF330Q9Y3S2 320 aaPredicted RBP19.53■□□□□ 0.72
LINC00643-205ENST00000623219 USP16Q9Y5T5 823 aa19.53■□□□□ 0.72
LINC00643-205ENST00000623219 THUMPD2Q9BTF0 503 aaKnown RBP19.52■□□□□ 0.72
LINC00643-205ENST00000623219 TMPOP42166 694 aaKnown RBP19.51■□□□□ 0.71
LINC00643-205ENST00000623219 RIPK4P57078 832 aa19.51■□□□□ 0.71
LINC00643-205ENST00000623219 ZNF784Q8NCA9 323 aaPredicted RBP19.51■□□□□ 0.71
LINC00643-205ENST00000623219 MIS18AQ9NYP9 233 aa19.51■□□□□ 0.71
LINC00643-205ENST00000623219 WWC3Q9ULE0 1092 aa19.51■□□□□ 0.71
LINC00643-205ENST00000623219 CARMIL3Q8ND23 1372 aa19.51■□□□□ 0.71
LINC00643-205ENST00000623219 A0A0G2JLW4 131 aa19.5■□□□□ 0.71
LINC00643-205ENST00000623219 RUNDC1Q96C34 613 aa19.5■□□□□ 0.71
LINC00643-205ENST00000623219 DPEP1P16444 411 aa19.49■□□□□ 0.71
LINC00643-205ENST00000623219 CCDC146Q8IYE0 955 aa19.49■□□□□ 0.71
LINC00643-205ENST00000623219 TBC1D2BQ9UPU7 963 aa19.49■□□□□ 0.71
LINC00643-205ENST00000623219 DICER1Q9UPY3 1922 aaKnown RBP19.49■□□□□ 0.71
LINC00643-205ENST00000623219 TIAM2Q8IVF5 1701 aa19.48■□□□□ 0.71
LINC00643-205ENST00000623219 ADCY9O60503 1353 aa19.48■□□□□ 0.71
LINC00643-205ENST00000623219 FER1L6Q2WGJ9 1857 aa19.48■□□□□ 0.71
LINC00643-205ENST00000623219 CAMTA2O94983 1202 aa19.48■□□□□ 0.71
LINC00643-205ENST00000623219 EIF4A1P60842 406 aaKnown RBP19.48■□□□□ 0.71
LINC00643-205ENST00000623219 DZIP3Q86Y13 1208 aaKnown RBP19.48■□□□□ 0.71
LINC00643-205ENST00000623219 GIGYF1O75420 1035 aaPredicted RBP19.47■□□□□ 0.71
LINC00643-205ENST00000623219 SERPINB2P05120 415 aa19.47■□□□□ 0.71
LINC00643-205ENST00000623219 KCNA3P22001 575 aa19.47■□□□□ 0.71
LINC00643-205ENST00000623219 PIP4K2AP48426 406 aaPredicted RBP19.47■□□□□ 0.71
LINC00643-205ENST00000623219 TBC1D9BQ66K14 1250 aa19.47■□□□□ 0.71
LINC00643-205ENST00000623219 BABAM1Q9NWV8 329 aa19.47■□□□□ 0.71
LINC00643-205ENST00000623219 ADAMTS8Q9UP79 889 aa19.47■□□□□ 0.71
LINC00643-205ENST00000623219 BCS1LQ9Y276 419 aa19.47■□□□□ 0.71
LINC00643-205ENST00000623219 TSPYL4Q9UJ04 414 aa19.46■□□□□ 0.71
LINC00643-205ENST00000623219 ZNF316A6NFI3 1004 aaPredicted RBP19.45■□□□□ 0.7
LINC00643-205ENST00000623219 NBPF26B4DH59 902 aa19.45■□□□□ 0.7
LINC00643-205ENST00000623219 NBPF10Q6P3W6 841 aaKnown RBP19.45■□□□□ 0.7
LINC00643-205ENST00000623219 BICDL1Q6ZP65 573 aa19.45■□□□□ 0.7
LINC00643-205ENST00000623219 NBPF15Q8N660 670 aa19.45■□□□□ 0.7
LINC00643-205ENST00000623219 PIM2Q9P1W9 311 aa19.45■□□□□ 0.7
LINC00643-205ENST00000623219 RRP7AQ9Y3A4 280 aaKnown RBP19.45■□□□□ 0.7
LINC00643-205ENST00000623219 TNRC6CQ9HCJ0 1690 aaKnown RBP19.44■□□□□ 0.7
LINC00643-205ENST00000623219 RGL2O15211 777 aa19.44■□□□□ 0.7
LINC00643-205ENST00000623219 ZNF652Q9Y2D9 606 aa19.44■□□□□ 0.7
LINC00643-205ENST00000623219 ATP10DQ9P241 1426 aa19.43■□□□□ 0.7
LINC00643-205ENST00000623219 CHRNA5P30532 468 aa19.43■□□□□ 0.7
LINC00643-205ENST00000623219 NEUROD2Q15784 382 aa19.43■□□□□ 0.7
LINC00643-205ENST00000623219 CLEC4GQ6UXB4 293 aa19.43■□□□□ 0.7
LINC00643-205ENST00000623219 ERBB4Q15303 1308 aa19.43■□□□□ 0.7
LINC00643-205ENST00000623219 SLX4Q8IY92 1834 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms