RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	CCDC87	Q9NVE4	849 aa		13.6	□□□□□ -0.23
PVT1-223	ENST00000615442	TFCP2L1	Q9NZI6	479 aa		13.6	□□□□□ -0.23
PVT1-223	ENST00000615442	CIC	Q96RK0	1608 aa	Predicted RBP	13.6	□□□□□ -0.23
PVT1-223	ENST00000615442	RPS6KA4	O75676	772 aa		13.59	□□□□□ -0.23
PVT1-223	ENST00000615442	KRT24	Q2M2I5	525 aa		13.59	□□□□□ -0.23
PVT1-223	ENST00000615442	C8orf58	Q8NAV2	365 aa		13.59	□□□□□ -0.23
PVT1-223	ENST00000615442	FLAD1	Q8NFF5	587 aa		13.59	□□□□□ -0.23
PVT1-223	ENST00000615442	CDCA7L	Q96GN5	454 aa		13.59	□□□□□ -0.23
PVT1-223	ENST00000615442	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.59	□□□□□ -0.23
PVT1-223	ENST00000615442	NUP188	Q5SRE5	1749 aa		13.59	□□□□□ -0.23
PVT1-223	ENST00000615442	GNPAT	O15228	680 aa		13.58	□□□□□ -0.24
PVT1-223	ENST00000615442	RTCB	Q9Y3I0	505 aa	Known RBP	13.58	□□□□□ -0.24
PVT1-223	ENST00000615442	C5	P01031	1676 aa		13.58	□□□□□ -0.24
PVT1-223	ENST00000615442	ERBB4	Q15303	1308 aa		13.58	□□□□□ -0.24
PVT1-223	ENST00000615442	TJP1	Q07157	1748 aa		13.57	□□□□□ -0.24
PVT1-223	ENST00000615442	A1BG	P04217	495 aa		13.57	□□□□□ -0.24
PVT1-223	ENST00000615442	ADRA2B	P18089	450 aa		13.57	□□□□□ -0.24
PVT1-223	ENST00000615442	SSFA2	P28290	1259 aa		13.57	□□□□□ -0.24
PVT1-223	ENST00000615442	IL6ST	P40189	918 aa	Predicted RBP	13.57	□□□□□ -0.24
PVT1-223	ENST00000615442	EXOSC9	Q06265	439 aa	Known RBP	13.57	□□□□□ -0.24
PVT1-223	ENST00000615442	C4B	P0C0L5	1744 aa		13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	ELL2	O00472	640 aa	Predicted RBP	13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	EIF2S2	P20042	333 aa	Known RBP	13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	CANX	P27824	592 aa	Known RBP	13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	R3HDM1	Q15032	1099 aa	Known RBP	13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	TWISTNB	Q3B726	338 aa	Predicted RBP	13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	TRAPPC3L	Q5T215	181 aa		13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	HDGFL1	Q5TGJ6	251 aa		13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	TSPYL6	Q8N831	410 aa		13.56	□□□□□ -0.24
PVT1-223	ENST00000615442	ZBTB1	Q9Y2K1	713 aa		13.56	□□□□□ -0.24
PVT1-223	ENST00000615442		A0A087WZG4	1122 aa		13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	NBPF26	B4DH59	902 aa		13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	VAMP4	O75379	141 aa		13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	EIF5	P55010	431 aa	Known RBP	13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	NBPF10	Q6P3W6	841 aa	Known RBP	13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	NBPF15	Q8N660	670 aa		13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	PNPLA7	Q6ZV29	1317 aa		13.55	□□□□□ -0.24
PVT1-223	ENST00000615442	COL5A3	P25940	1745 aa	Predicted RBP	13.54	□□□□□ -0.24
PVT1-223	ENST00000615442	PDIA6	Q15084	440 aa		13.54	□□□□□ -0.24
PVT1-223	ENST00000615442	CCDC30	Q5VVM6	783 aa		13.54	□□□□□ -0.24
PVT1-223	ENST00000615442	NPM2	Q86SE8	214 aa	Known RBP	13.54	□□□□□ -0.24
PVT1-223	ENST00000615442	COL23A1	Q86Y22	540 aa	Predicted RBP	13.54	□□□□□ -0.24
PVT1-223	ENST00000615442	ARHGEF1	Q92888	912 aa	Known RBP	13.54	□□□□□ -0.24
PVT1-223	ENST00000615442	DBF4	Q9UBU7	674 aa	Predicted RBP	13.54	□□□□□ -0.24
PVT1-223	ENST00000615442	TAF1L	Q8IZX4	1826 aa		13.53	□□□□□ -0.24
PVT1-223	ENST00000615442	PSD	A5PKW4	1024 aa	Predicted RBP	13.53	□□□□□ -0.24
PVT1-223	ENST00000615442	PHF14	O94880	888 aa		13.53	□□□□□ -0.24
PVT1-223	ENST00000615442	CT47B1	P0C2W7	299 aa	Predicted RBP	13.53	□□□□□ -0.24
PVT1-223	ENST00000615442	AMIGO3	Q86WK7	504 aa		13.53	□□□□□ -0.24
PVT1-223	ENST00000615442	SLC16A10	Q8TF71	515 aa		13.53	□□□□□ -0.24
PVT1-223	ENST00000615442	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
PVT1-223	ENST00000615442	RFC4	P35249	363 aa		13.52	□□□□□ -0.25
PVT1-223	ENST00000615442	NECTIN2	Q92692	538 aa		13.52	□□□□□ -0.25
PVT1-223	ENST00000615442	ZNF428	Q96B54	188 aa		13.52	□□□□□ -0.25
PVT1-223	ENST00000615442	COL15A1	P39059	1388 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	MSH5	O43196	834 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	MYL6B	P14649	208 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	PIP4K2A	P48426	406 aa	Predicted RBP	13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	SMIM5	Q71RC9	77 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	LRP10	Q7Z4F1	713 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	STK31	Q9BXU1	1019 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	HYPK	Q9NX55	129 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	CHPF2	Q9P2E5	772 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	NARF	Q9UHQ1	456 aa		13.51	□□□□□ -0.25
PVT1-223	ENST00000615442	ZPR1	O75312	459 aa		13.5	□□□□□ -0.25
PVT1-223	ENST00000615442	YTHDC1	Q96MU7	727 aa	Known RBP	13.5	□□□□□ -0.25
PVT1-223	ENST00000615442	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.5	□□□□□ -0.25
PVT1-223	ENST00000615442	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.5	□□□□□ -0.25
PVT1-223	ENST00000615442	RGL2	O15211	777 aa		13.49	□□□□□ -0.25
PVT1-223	ENST00000615442	PROSER3	Q2NL68	480 aa		13.49	□□□□□ -0.25
PVT1-223	ENST00000615442	DZIP3	Q86Y13	1208 aa	Known RBP	13.49	□□□□□ -0.25
PVT1-223	ENST00000615442	LAMB4	A4D0S4	1761 aa		13.49	□□□□□ -0.25
PVT1-223	ENST00000615442	USP42	Q9H9J4	1324 aa	Known RBP	13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	ERVV-1	B6SEH8	477 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	ANXA1	P04083	346 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	SLC4A2	P04920	1241 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	COPS6	Q7L5N1	327 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	NLGN1	Q8N2Q7	840 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	ARX	Q96QS3	562 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	MTFR1L	Q9H019	292 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	TBC1D2B	Q9UPU7	963 aa		13.48	□□□□□ -0.25
PVT1-223	ENST00000615442	QSER1	Q2KHR3	1735 aa		13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	GYS1	P13807	737 aa		13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	ALDH1L2	Q3SY69	923 aa		13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	USPL1	Q5W0Q7	1092 aa		13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	CLEC4G	Q6UXB4	293 aa		13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	KIF6	Q6ZMV9	814 aa		13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	XAGE3	Q8WTP9	111 aa		13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	MYH14	Q7Z406	1995 aa	Known RBP	13.47	□□□□□ -0.25
PVT1-223	ENST00000615442	UBR3	Q6ZT12	1888 aa		13.46	□□□□□ -0.25
PVT1-223	ENST00000615442	TCERG1	O14776	1098 aa	Known RBP	13.46	□□□□□ -0.25
PVT1-223	ENST00000615442	CAMTA2	O94983	1202 aa		13.46	□□□□□ -0.25
PVT1-223	ENST00000615442	TTLL7	Q6ZT98	887 aa		13.46	□□□□□ -0.25
PVT1-223	ENST00000615442	SRP68	Q9UHB9	627 aa	Known RBP	13.46	□□□□□ -0.25
PVT1-223	ENST00000615442	MAP3K15	Q6ZN16	1313 aa		13.45	□□□□□ -0.26
PVT1-223	ENST00000615442	ZBTB7A	O95365	584 aa		13.45	□□□□□ -0.26
PVT1-223	ENST00000615442	DDX58	O95786	925 aa	Known RBP	13.45	□□□□□ -0.26
PVT1-223	ENST00000615442	AIMP1	Q12904	312 aa	Known RBP	13.45	□□□□□ -0.26
PVT1-223	ENST00000615442	ANKRD13D	Q6ZTN6	518 aa		13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms