RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 ZNF831Q5JPB2 1677 aa18.88■□□□□ 0.61
CD48-203ENST00000613788 ERBB4Q15303 1308 aa18.87■□□□□ 0.61
CD48-203ENST00000613788 DBF4Q9UBU7 674 aaPredicted RBP18.87■□□□□ 0.61
CD48-203ENST00000613788 RARSP54136 660 aaKnown RBP18.86■□□□□ 0.61
CD48-203ENST00000613788 EZH2Q15910 746 aaKnown RBP18.86■□□□□ 0.61
CD48-203ENST00000613788 DEFB132Q7Z7B7 95 aa18.86■□□□□ 0.61
CD48-203ENST00000613788 LINC00116Q8NCU8 138 aa18.86■□□□□ 0.61
CD48-203ENST00000613788 RCAN3Q9UKA8 241 aa18.86■□□□□ 0.61
CD48-203ENST00000613788 A1BGP04217 495 aa18.85■□□□□ 0.61
CD48-203ENST00000613788 RC3H1Q5TC82 1133 aaKnown RBP18.85■□□□□ 0.61
CD48-203ENST00000613788 CCDC87Q9NVE4 849 aa18.85■□□□□ 0.61
CD48-203ENST00000613788 SLC4A2P04920 1241 aa18.84■□□□□ 0.61
CD48-203ENST00000613788 CRKLP46109 303 aaKnown RBP18.84■□□□□ 0.61
CD48-203ENST00000613788 SSH1Q8WYL5 1049 aa18.84■□□□□ 0.61
CD48-203ENST00000613788 DDX21Q9NR30 783 aaKnown RBP eCLIP18.84■□□□□ 0.61
CD48-203ENST00000613788 SMC4Q9NTJ3 1288 aa18.84■□□□□ 0.61
CD48-203ENST00000613788 CNTNAP4Q9C0A0 1308 aa18.84■□□□□ 0.61
CD48-203ENST00000613788 CICQ96RK0 1608 aaPredicted RBP18.84■□□□□ 0.61
CD48-203ENST00000613788 RGPD3A6NKT7 1758 aaPredicted RBP18.84■□□□□ 0.61
CD48-203ENST00000613788 RGPD4Q7Z3J3 1758 aa18.84■□□□□ 0.61
CD48-203ENST00000613788 TCERG1O14776 1098 aaKnown RBP18.84■□□□□ 0.61
CD48-203ENST00000613788 HYPKQ9NX55 129 aa18.84■□□□□ 0.61
CD48-203ENST00000613788 CHPF2Q9P2E5 772 aa18.84■□□□□ 0.61
CD48-203ENST00000613788 C5P01031 1676 aa18.83■□□□□ 0.61
CD48-203ENST00000613788 TJP1Q07157 1748 aa18.83■□□□□ 0.6
CD48-203ENST00000613788 INTS5Q6P9B9 1019 aaKnown RBP18.83■□□□□ 0.6
CD48-203ENST00000613788 NPM2Q86SE8 214 aaKnown RBP18.83■□□□□ 0.6
CD48-203ENST00000613788 MYL6BP14649 208 aa18.82■□□□□ 0.6
CD48-203ENST00000613788 CANXP27824 592 aaKnown RBP18.82■□□□□ 0.6
CD48-203ENST00000613788 PDIA6Q15084 440 aa18.82■□□□□ 0.6
CD48-203ENST00000613788 LAMB4A4D0S4 1761 aa18.82■□□□□ 0.6
CD48-203ENST00000613788 NBPF26B4DH59 902 aa18.81■□□□□ 0.6
CD48-203ENST00000613788 IL6STP40189 918 aaPredicted RBP18.81■□□□□ 0.6
CD48-203ENST00000613788 BRPF1P55201 1214 aaPredicted RBP18.81■□□□□ 0.6
CD48-203ENST00000613788 NBPF14Q5TI25 921 aa18.81■□□□□ 0.6
CD48-203ENST00000613788 NBPF10Q6P3W6 841 aaKnown RBP18.81■□□□□ 0.6
CD48-203ENST00000613788 MRPL50Q8N5N7 158 aaKnown RBP18.81■□□□□ 0.6
CD48-203ENST00000613788 NBPF15Q8N660 670 aa18.81■□□□□ 0.6
CD48-203ENST00000613788 AK7Q96M32 723 aa18.81■□□□□ 0.6
CD48-203ENST00000613788 BCL2L13Q9BXK5 485 aa18.81■□□□□ 0.6
CD48-203ENST00000613788 ZBTB1Q9Y2K1 713 aa18.81■□□□□ 0.6
CD48-203ENST00000613788 RPS6KA4O75676 772 aa18.79■□□□□ 0.6
CD48-203ENST00000613788 BCAR3O75815 825 aa18.79■□□□□ 0.6
CD48-203ENST00000613788 PIP4K2AP48426 406 aaPredicted RBP18.79■□□□□ 0.6
CD48-203ENST00000613788 PROSER3Q2NL68 480 aa18.79■□□□□ 0.6
CD48-203ENST00000613788 RTCBQ9Y3I0 505 aaKnown RBP18.79■□□□□ 0.6
CD48-203ENST00000613788 ANXA1P04083 346 aa18.79■□□□□ 0.6
CD48-203ENST00000613788 COL5A3P25940 1745 aaPredicted RBP18.78■□□□□ 0.6
CD48-203ENST00000613788 GNPATO15228 680 aa18.78■□□□□ 0.6
CD48-203ENST00000613788 EIF5P55010 431 aaKnown RBP18.78■□□□□ 0.6
CD48-203ENST00000613788 ZNF330Q9Y3S2 320 aaPredicted RBP18.78■□□□□ 0.6
CD48-203ENST00000613788 KIF16BQ96L93 1317 aa18.78■□□□□ 0.6
CD48-203ENST00000613788 IPO8O15397 1037 aaKnown RBP18.77■□□□□ 0.6
CD48-203ENST00000613788 LRP10Q7Z4F1 713 aa18.77■□□□□ 0.6
CD48-203ENST00000613788 AKT1S1Q96B36 256 aa18.77■□□□□ 0.6
CD48-203ENST00000613788 PHAXQ9H814 394 aaKnown RBP18.77■□□□□ 0.6
CD48-203ENST00000613788 TAF1LQ8IZX4 1826 aa18.77■□□□□ 0.59
CD48-203ENST00000613788 A0A087WZG4 1122 aa18.76■□□□□ 0.59
CD48-203ENST00000613788 DDX58O95786 925 aaKnown RBP18.76■□□□□ 0.59
CD48-203ENST00000613788 C4BP0C0L5 1744 aa18.76■□□□□ 0.59
CD48-203ENST00000613788 FLIIQ13045 1269 aa18.76■□□□□ 0.59
CD48-203ENST00000613788 COPS6Q7L5N1 327 aa18.76■□□□□ 0.59
CD48-203ENST00000613788 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.76■□□□□ 0.59
CD48-203ENST00000613788 XAGE3Q8WTP9 111 aa18.76■□□□□ 0.59
CD48-203ENST00000613788 STK32BQ9NY57 414 aa18.76■□□□□ 0.59
CD48-203ENST00000613788 PTPRCP08575 1304 aa18.75■□□□□ 0.59
CD48-203ENST00000613788 AIMP1Q12904 312 aaKnown RBP18.75■□□□□ 0.59
CD48-203ENST00000613788 G2E3Q7L622 706 aa18.75■□□□□ 0.59
CD48-203ENST00000613788 FRAT1Q92837 279 aaPredicted RBP18.75■□□□□ 0.59
CD48-203ENST00000613788 TFCP2L1Q9NZI6 479 aa18.75■□□□□ 0.59
CD48-203ENST00000613788 NOB1Q9ULX3 412 aaKnown RBP18.75■□□□□ 0.59
CD48-203ENST00000613788 ADRA2BP18089 450 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 SSFA2P28290 1259 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 FKBP5Q13451 457 aaPredicted RBP18.74■□□□□ 0.59
CD48-203ENST00000613788 TRAPPC3LQ5T215 181 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 ARHGAP45Q92619 1136 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 ARXQ96QS3 562 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 SLC15A2Q16348 729 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 KIF6Q6ZMV9 814 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 FLAD1Q8NFF5 587 aa18.74■□□□□ 0.59
CD48-203ENST00000613788 COL15A1P39059 1388 aa18.73■□□□□ 0.59
CD48-203ENST00000613788 RREB1Q92766 1687 aa18.73■□□□□ 0.59
CD48-203ENST00000613788 CACNA1FO60840 1977 aa18.73■□□□□ 0.59
CD48-203ENST00000613788 MYH14Q7Z406 1995 aaKnown RBP18.73■□□□□ 0.59
CD48-203ENST00000613788 ZNF827Q17R98 1081 aa18.73■□□□□ 0.59
CD48-203ENST00000613788 ZKSCAN2Q63HK3 967 aa18.73■□□□□ 0.59
CD48-203ENST00000613788 ANKRD13DQ6ZTN6 518 aa18.73■□□□□ 0.59
CD48-203ENST00000613788 DZIP3Q86Y13 1208 aaKnown RBP18.73■□□□□ 0.59
CD48-203ENST00000613788 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.72■□□□□ 0.59
CD48-203ENST00000613788 TTLL7Q6ZT98 887 aa18.72■□□□□ 0.59
CD48-203ENST00000613788 API5Q9BZZ5 524 aaKnown RBP18.72■□□□□ 0.59
CD48-203ENST00000613788 PHF14O94880 888 aa18.71■□□□□ 0.59
CD48-203ENST00000613788 RFC4P35249 363 aa18.71■□□□□ 0.59
CD48-203ENST00000613788 KSR2Q6VAB6 950 aa18.71■□□□□ 0.59
CD48-203ENST00000613788 RIC3Q7Z5B4 369 aa18.71■□□□□ 0.59
CD48-203ENST00000613788 PLBD2Q8NHP8 589 aa18.71■□□□□ 0.59
CD48-203ENST00000613788 ARHGEF1Q92888 912 aaKnown RBP18.71■□□□□ 0.59
CD48-203ENST00000613788 TBC1D2BQ9UPU7 963 aa18.71■□□□□ 0.59
CD48-203ENST00000613788 SUPT16HQ9Y5B9 1047 aaKnown RBP18.71■□□□□ 0.59
CD48-203ENST00000613788 MS4A1P11836 297 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms