RNA–Protein interactions for RNA: ENST00000612467.1

PCDHGA3-202, Transcript of protocadherin gamma subfamily A, 3, humanhuman

TSL 2

Gene PCDHGA3, Length 2,712 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-202ENST00000612467 PA2G4Q9UQ80 394 aaKnown RBP17.27■□□□□ 0.35
PCDHGA3-202ENST00000612467 ZNF142P52746 1687 aaPredicted RBP17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 GOLGA6L3A6NEY3 463 aa17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 MED1Q15648 1581 aaPredicted RBP17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 BABAM1Q9NWV8 329 aa17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 DDX11L8A8MPP1 907 aa17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 NEK4P51957 841 aa17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 CHRNA2Q15822 529 aa17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 CIZ1Q9ULV3 898 aaPredicted RBP17.26■□□□□ 0.35
PCDHGA3-202ENST00000612467 KDM3BQ7LBC6 1761 aa17.25■□□□□ 0.35
PCDHGA3-202ENST00000612467 CACNA1FO60840 1977 aa17.25■□□□□ 0.35
PCDHGA3-202ENST00000612467 GIGYF1O75420 1035 aaPredicted RBP17.25■□□□□ 0.35
PCDHGA3-202ENST00000612467 RHPN1Q8TCX5 695 aa17.25■□□□□ 0.35
PCDHGA3-202ENST00000612467 NLRP2Q9NX02 1062 aa17.25■□□□□ 0.35
PCDHGA3-202ENST00000612467 DTNBO60941 627 aa17.25■□□□□ 0.35
PCDHGA3-202ENST00000612467 UPF3BQ9BZI7 483 aaKnown RBP17.25■□□□□ 0.35
PCDHGA3-202ENST00000612467 GAS2L3Q86XJ1 694 aa17.24■□□□□ 0.35
PCDHGA3-202ENST00000612467 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.24■□□□□ 0.35
PCDHGA3-202ENST00000612467 ADAMTSL3P82987 1691 aa17.24■□□□□ 0.35
PCDHGA3-202ENST00000612467 JARID2Q92833 1246 aaPredicted RBP17.24■□□□□ 0.35
PCDHGA3-202ENST00000612467 GBP4Q96PP9 640 aa17.24■□□□□ 0.35
PCDHGA3-202ENST00000612467 FSD2A1L4K1 749 aa17.23■□□□□ 0.35
PCDHGA3-202ENST00000612467 POLA2Q14181 598 aa17.23■□□□□ 0.35
PCDHGA3-202ENST00000612467 TUBGCP6Q96RT7 1819 aa17.23■□□□□ 0.35
PCDHGA3-202ENST00000612467 BAG4O95429 457 aaKnown RBP17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 MYL6BP14649 208 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 LMO7Q8WWI1 1683 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 OS9Q13438 667 aaPredicted RBP17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 AMOTQ4VCS5 1084 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 MCTP1Q6DN14 999 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 PI4K2BQ8TCG2 481 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 LARP6Q9BRS8 491 aaKnown RBP17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 PXDNLA1KZ92 1463 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 C1orf167Q5SNV9 1468 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 ERBB3P21860 1342 aa17.22■□□□□ 0.35
PCDHGA3-202ENST00000612467 ST18O60284 1047 aa17.21■□□□□ 0.35
PCDHGA3-202ENST00000612467 DBF4Q9UBU7 674 aaPredicted RBP17.21■□□□□ 0.35
PCDHGA3-202ENST00000612467 STAP2Q9UGK3 403 aa17.21■□□□□ 0.35
PCDHGA3-202ENST00000612467 C9orf78Q9NZ63 289 aaPredicted RBP17.21■□□□□ 0.35
PCDHGA3-202ENST00000612467 NFATC2IPQ8NCF5 419 aa17.2■□□□□ 0.34
PCDHGA3-202ENST00000612467 ZDHHC9Q9Y397 364 aa17.2■□□□□ 0.34
PCDHGA3-202ENST00000612467 SLIT3O75094 1523 aa17.2■□□□□ 0.34
PCDHGA3-202ENST00000612467 KLHDC4Q8TBB5 520 aa17.2■□□□□ 0.34
PCDHGA3-202ENST00000612467 N4BP2Q86UW6 1770 aaPredicted RBP17.19■□□□□ 0.34
PCDHGA3-202ENST00000612467 FOXD4L6Q3SYB3 417 aaPredicted RBP17.19■□□□□ 0.34
PCDHGA3-202ENST00000612467 L1TD1Q5T7N2 865 aaKnown RBP17.19■□□□□ 0.34
PCDHGA3-202ENST00000612467 FOXD4L3Q6VB84 417 aaPredicted RBP17.19■□□□□ 0.34
PCDHGA3-202ENST00000612467 TMX3Q96JJ7 454 aa17.19■□□□□ 0.34
PCDHGA3-202ENST00000612467 C19orf44Q9H6X5 657 aa17.19■□□□□ 0.34
PCDHGA3-202ENST00000612467 CSB-PGBD3P0DP91 1061 aa17.19■□□□□ 0.34
PCDHGA3-202ENST00000612467 TRPM3Q9HCF6 1732 aaPredicted RBP17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 HSPA2P54652 639 aa17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 SPG7Q9UQ90 795 aa17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 HOXB7P09629 217 aa17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 PDIA6Q15084 440 aa17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 CWC27Q6UX04 472 aaKnown RBP17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 KAZALD1Q96I82 304 aa17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 SUCLG2Q96I99 432 aa17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 SIL1Q9H173 461 aa17.18■□□□□ 0.34
PCDHGA3-202ENST00000612467 NCLP19338 710 aaKnown RBP17.17■□□□□ 0.34
PCDHGA3-202ENST00000612467 KSR2Q6VAB6 950 aa17.17■□□□□ 0.34
PCDHGA3-202ENST00000612467 KIF1BPQ96EK5 621 aa17.17■□□□□ 0.34
PCDHGA3-202ENST00000612467 TMEM94Q12767 1356 aa17.17■□□□□ 0.34
PCDHGA3-202ENST00000612467 RAPGEF4Q8WZA2 1011 aa17.17■□□□□ 0.34
PCDHGA3-202ENST00000612467 CYP2E1P05181 493 aaPredicted RBP17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 CPA1P15085 419 aa17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 DDX54Q8TDD1 881 aaKnown RBP17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 DDX49Q9Y6V7 483 aaKnown RBP17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 PHRF1Q9P1Y6 1649 aaKnown RBP17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 ATF3P18847 181 aa17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 GRPEL1Q9HAV7 217 aa17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 RRAGDQ9NQL2 400 aaPredicted RBP17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 KDM6AO15550 1401 aaPredicted RBP17.16■□□□□ 0.34
PCDHGA3-202ENST00000612467 MEGF6O75095 1541 aa17.15■□□□□ 0.34
PCDHGA3-202ENST00000612467 RAB11FIP3O75154 756 aa17.15■□□□□ 0.34
PCDHGA3-202ENST00000612467 ZNF790Q6PG37 636 aa17.15■□□□□ 0.34
PCDHGA3-202ENST00000612467 ZNF496Q96IT1 587 aaPredicted RBP17.15■□□□□ 0.34
PCDHGA3-202ENST00000612467 BICC1Q9H694 974 aaKnown RBP17.15■□□□□ 0.34
PCDHGA3-202ENST00000612467 USP16Q9Y5T5 823 aa17.15■□□□□ 0.34
PCDHGA3-202ENST00000612467 IGKV5-2P06315 115 aa17.14■□□□□ 0.33
PCDHGA3-202ENST00000612467 TLR7Q9NYK1 1049 aaKnown RBP17.14■□□□□ 0.33
PCDHGA3-202ENST00000612467 NCAPD2Q15021 1401 aa17.14■□□□□ 0.33
PCDHGA3-202ENST00000612467 HEG1Q9ULI3 1381 aa17.14■□□□□ 0.33
PCDHGA3-202ENST00000612467 RASEFQ8IZ41 740 aa17.14■□□□□ 0.33
PCDHGA3-202ENST00000612467 CCDC8Q9H0W5 538 aaPredicted RBP17.14■□□□□ 0.33
PCDHGA3-202ENST00000612467 NPHP3Q7Z494 1330 aa17.14■□□□□ 0.33
PCDHGA3-202ENST00000612467 PRPF40AO75400 957 aaKnown RBP17.13■□□□□ 0.33
PCDHGA3-202ENST00000612467 XAGE3Q8WTP9 111 aa17.13■□□□□ 0.33
PCDHGA3-202ENST00000612467 RBM27Q9P2N5 1060 aaKnown RBP17.13■□□□□ 0.33
PCDHGA3-202ENST00000612467 PHKG2P15735 406 aa17.13■□□□□ 0.33
PCDHGA3-202ENST00000612467 EPHA10Q5JZY3 1008 aa17.13■□□□□ 0.33
PCDHGA3-202ENST00000612467 RIC3Q7Z5B4 369 aa17.13■□□□□ 0.33
PCDHGA3-202ENST00000612467 SLC52A2Q9HAB3 445 aa17.13■□□□□ 0.33
PCDHGA3-202ENST00000612467 CYP27B1O15528 508 aa17.12■□□□□ 0.33
PCDHGA3-202ENST00000612467 COPS6Q7L5N1 327 aa17.12■□□□□ 0.33
PCDHGA3-202ENST00000612467 NSFL1CQ9UNZ2 370 aaKnown RBP17.12■□□□□ 0.33
PCDHGA3-202ENST00000612467 GRM8O00222 908 aa17.12■□□□□ 0.33
PCDHGA3-202ENST00000612467 NUCB2P80303 420 aa17.12■□□□□ 0.33
PCDHGA3-202ENST00000612467 TPRNQ4KMQ1 711 aa17.12■□□□□ 0.33
PCDHGA3-202ENST00000612467 CAVIN1Q6NZI2 390 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms