RNA–Protein interactions for RNA: ENST00000612050.4

CBWD3-208, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 1,440 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-208ENST00000612050 PELP1Q8IZL8 1130 aaKnown RBP16.23■□□□□ 0.19
CBWD3-208ENST00000612050 ZNF496Q96IT1 587 aaPredicted RBP16.23■□□□□ 0.19
CBWD3-208ENST00000612050 PLEKHF1Q96S99 279 aa16.23■□□□□ 0.19
CBWD3-208ENST00000612050 PARP3Q9Y6F1 533 aa16.23■□□□□ 0.19
CBWD3-208ENST00000612050 MYH14Q7Z406 1995 aaKnown RBP16.23■□□□□ 0.19
CBWD3-208ENST00000612050 ANP32CO43423 234 aa16.22■□□□□ 0.19
CBWD3-208ENST00000612050 SMIM5Q71RC9 77 aa16.22■□□□□ 0.19
CBWD3-208ENST00000612050 AMIGO3Q86WK7 504 aa16.22■□□□□ 0.19
CBWD3-208ENST00000612050 C4AP0C0L4 1744 aa16.22■□□□□ 0.19
CBWD3-208ENST00000612050 NPM3O75607 178 aaKnown RBP16.21■□□□□ 0.19
CBWD3-208ENST00000612050 MMP10P09238 476 aa16.21■□□□□ 0.19
CBWD3-208ENST00000612050 CANXP27824 592 aaKnown RBP16.21■□□□□ 0.19
CBWD3-208ENST00000612050 DCTN1Q14203 1278 aa16.21■□□□□ 0.19
CBWD3-208ENST00000612050 INTS5Q6P9B9 1019 aaKnown RBP16.21■□□□□ 0.19
CBWD3-208ENST00000612050 SNRPA1P09661 255 aaKnown RBP16.2■□□□□ 0.18
CBWD3-208ENST00000612050 RIPK4P57078 832 aa16.2■□□□□ 0.18
CBWD3-208ENST00000612050 ZNF330Q9Y3S2 320 aaPredicted RBP16.2■□□□□ 0.18
CBWD3-208ENST00000612050 SOS1Q07889 1333 aaPredicted RBP16.2■□□□□ 0.18
CBWD3-208ENST00000612050 USP42Q9H9J4 1324 aaKnown RBP16.2■□□□□ 0.18
CBWD3-208ENST00000612050 COL15A1P39059 1388 aa16.2■□□□□ 0.18
CBWD3-208ENST00000612050 GYS1P13807 737 aa16.19■□□□□ 0.18
CBWD3-208ENST00000612050 RUNDC1Q96C34 613 aa16.19■□□□□ 0.18
CBWD3-208ENST00000612050 ZBTB1Q9Y2K1 713 aa16.19■□□□□ 0.18
CBWD3-208ENST00000612050 NARFQ9UHQ1 456 aa16.18■□□□□ 0.18
CBWD3-208ENST00000612050 GRIN3BO60391 1043 aa16.17■□□□□ 0.18
CBWD3-208ENST00000612050 YY1P25490 414 aa16.17■□□□□ 0.18
CBWD3-208ENST00000612050 IL6STP40189 918 aaPredicted RBP16.17■□□□□ 0.18
CBWD3-208ENST00000612050 TMPOP42166 694 aaKnown RBP16.17■□□□□ 0.18
CBWD3-208ENST00000612050 USPL1Q5W0Q7 1092 aa16.17■□□□□ 0.18
CBWD3-208ENST00000612050 CCDC146Q8IYE0 955 aa16.17■□□□□ 0.18
CBWD3-208ENST00000612050 NEUROD2Q15784 382 aa16.16■□□□□ 0.18
CBWD3-208ENST00000612050 NLGN2Q8NFZ4 835 aa16.16■□□□□ 0.18
CBWD3-208ENST00000612050 SRP68Q9UHB9 627 aaKnown RBP16.16■□□□□ 0.18
CBWD3-208ENST00000612050 TSPYL4Q9UJ04 414 aa16.15■□□□□ 0.18
CBWD3-208ENST00000612050 ADAMTS8Q9UP79 889 aa16.15■□□□□ 0.18
CBWD3-208ENST00000612050 NPHP1O15259 732 aa16.14■□□□□ 0.17
CBWD3-208ENST00000612050 KCNQ3O43525 872 aa16.14■□□□□ 0.17
CBWD3-208ENST00000612050 TGFB2P61812 414 aa16.14■□□□□ 0.17
CBWD3-208ENST00000612050 BABAM1Q9NWV8 329 aa16.14■□□□□ 0.17
CBWD3-208ENST00000612050 EIF5P55010 431 aaKnown RBP16.13■□□□□ 0.17
CBWD3-208ENST00000612050 CALD1Q05682 793 aaKnown RBP16.13■□□□□ 0.17
CBWD3-208ENST00000612050 FKBP8Q14318 412 aa16.13■□□□□ 0.17
CBWD3-208ENST00000612050 ZNF652Q9Y2D9 606 aa16.13■□□□□ 0.17
CBWD3-208ENST00000612050 KDM3BQ7LBC6 1761 aa16.13■□□□□ 0.17
CBWD3-208ENST00000612050 LAMB4A4D0S4 1761 aa16.13■□□□□ 0.17
CBWD3-208ENST00000612050 CHD4Q14839 1912 aa16.13■□□□□ 0.17
CBWD3-208ENST00000612050 A1BGP04217 495 aa16.12■□□□□ 0.17
CBWD3-208ENST00000612050 THUMPD2Q9BTF0 503 aaKnown RBP16.12■□□□□ 0.17
CBWD3-208ENST00000612050 MIS18AQ9NYP9 233 aa16.12■□□□□ 0.17
CBWD3-208ENST00000612050 RRP7AQ9Y3A4 280 aaKnown RBP16.12■□□□□ 0.17
CBWD3-208ENST00000612050 DZIP3Q86Y13 1208 aaKnown RBP16.11■□□□□ 0.17
CBWD3-208ENST00000612050 USP16Q9Y5T5 823 aa16.11■□□□□ 0.17
CBWD3-208ENST00000612050 MRS2Q9HD23 443 aa16.11■□□□□ 0.17
CBWD3-208ENST00000612050 RNF216Q9NWF9 866 aaPredicted RBP16.11■□□□□ 0.17
CBWD3-208ENST00000612050 LAS1LQ9Y4W2 734 aaKnown RBP16.11■□□□□ 0.17
CBWD3-208ENST00000612050 KIF13BQ9NQT8 1826 aa16.1■□□□□ 0.17
CBWD3-208ENST00000612050 C10orf71Q711Q0 1435 aa16.1■□□□□ 0.17
CBWD3-208ENST00000612050 TBC1D2BQ9UPU7 963 aa16.1■□□□□ 0.17
CBWD3-208ENST00000612050 TM4SF1P30408 202 aa16.09■□□□□ 0.17
CBWD3-208ENST00000612050 EIF4A1P60842 406 aaKnown RBP16.09■□□□□ 0.17
CBWD3-208ENST00000612050 BICDL1Q6ZP65 573 aa16.09■□□□□ 0.17
CBWD3-208ENST00000612050 SCN7AQ01118 1682 aa16.09■□□□□ 0.17
CBWD3-208ENST00000612050 POLRMTO00411 1230 aaKnown RBP16.08■□□□□ 0.16
CBWD3-208ENST00000612050 GIGYF1O75420 1035 aaPredicted RBP16.08■□□□□ 0.16
CBWD3-208ENST00000612050 SERPINB2P05120 415 aa16.08■□□□□ 0.16
CBWD3-208ENST00000612050 NFIXQ14938 502 aa16.08■□□□□ 0.16
CBWD3-208ENST00000612050 SETDB2Q96T68 719 aa16.08■□□□□ 0.16
CBWD3-208ENST00000612050 CARMIL3Q8ND23 1372 aa16.07■□□□□ 0.16
CBWD3-208ENST00000612050 PRAMEF22A3QJZ6 481 aa16.07■□□□□ 0.16
CBWD3-208ENST00000612050 HOXD11P31277 338 aaPredicted RBP16.07■□□□□ 0.16
CBWD3-208ENST00000612050 DDR1Q08345 913 aa16.07■□□□□ 0.16
CBWD3-208ENST00000612050 KIF6Q6ZMV9 814 aa16.07■□□□□ 0.16
CBWD3-208ENST00000612050 ERBB4Q15303 1308 aa16.07■□□□□ 0.16
CBWD3-208ENST00000612050 APAF1O14727 1248 aa16.06■□□□□ 0.16
CBWD3-208ENST00000612050 CLEC4GQ6UXB4 293 aa16.06■□□□□ 0.16
CBWD3-208ENST00000612050 PIM2Q9P1W9 311 aa16.06■□□□□ 0.16
CBWD3-208ENST00000612050 PDZRN3Q9UPQ7 1066 aa16.06■□□□□ 0.16
CBWD3-208ENST00000612050 N4BP2Q86UW6 1770 aaPredicted RBP16.05■□□□□ 0.16
CBWD3-208ENST00000612050 A0A0G2JLW4 131 aa16.05■□□□□ 0.16
CBWD3-208ENST00000612050 RGL2O15211 777 aa16.05■□□□□ 0.16
CBWD3-208ENST00000612050 ST5P78524 1137 aa16.05■□□□□ 0.16
CBWD3-208ENST00000612050 BCS1LQ9Y276 419 aa16.05■□□□□ 0.16
CBWD3-208ENST00000612050 PXDNLA1KZ92 1463 aa16.05■□□□□ 0.16
CBWD3-208ENST00000612050 BCORQ6W2J9 1755 aa16.05■□□□□ 0.16
CBWD3-208ENST00000612050 CAMTA2O94983 1202 aa16.04■□□□□ 0.16
CBWD3-208ENST00000612050 YBX3P16989 372 aaKnown RBP eCLIP16.04■□□□□ 0.16
CBWD3-208ENST00000612050 PIP4K2AP48426 406 aaPredicted RBP16.04■□□□□ 0.16
CBWD3-208ENST00000612050 TBC1D9BQ66K14 1250 aa16.04■□□□□ 0.16
CBWD3-208ENST00000612050 NGEFQ8N5V2 710 aa16.04■□□□□ 0.16
CBWD3-208ENST00000612050 CHMP4AQ9BY43 222 aa16.04■□□□□ 0.16
CBWD3-208ENST00000612050 WWC3Q9ULE0 1092 aa16.04■□□□□ 0.16
CBWD3-208ENST00000612050 MYL6BP14649 208 aa16.03■□□□□ 0.16
CBWD3-208ENST00000612050 DPEP1P16444 411 aa16.03■□□□□ 0.16
CBWD3-208ENST00000612050 EIF2S2P20042 333 aaKnown RBP16.03■□□□□ 0.16
CBWD3-208ENST00000612050 GNAI1P63096 354 aa16.03■□□□□ 0.16
CBWD3-208ENST00000612050 CNBD1Q8NA66 436 aa16.03■□□□□ 0.16
CBWD3-208ENST00000612050 CFAP44Q96MT7 982 aa16.03■□□□□ 0.16
CBWD3-208ENST00000612050 BCL2L12Q9HB09 334 aa16.03■□□□□ 0.16
CBWD3-208ENST00000612050 TRIM35Q9UPQ4 493 aa16.03■□□□□ 0.16
CBWD3-208ENST00000612050 AFDNP55196 1824 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms