RNA–Protein interactions for RNA: ENST00000602726.1

PPFIA3-208, Transcript of PTPRF interacting protein alpha 3, human

TSL 2

Gene PPFIA3, Length 805 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA3-208	ENST00000602726	SRP68	Q9UHB9	627 aa	Known RBP	28.91	■■■□□ 2.22
PPFIA3-208	ENST00000602726	C4A	P0C0L4	1744 aa		28.91	■■■□□ 2.22
PPFIA3-208	ENST00000602726	CANX	P27824	592 aa	Known RBP	28.9	■■■□□ 2.22
PPFIA3-208	ENST00000602726	USP42	Q9H9J4	1324 aa	Known RBP	28.9	■■■□□ 2.22
PPFIA3-208	ENST00000602726	ZPR1	O75312	459 aa		28.89	■■■□□ 2.22
PPFIA3-208	ENST00000602726	GPR162	Q16538	588 aa		28.89	■■■□□ 2.22
PPFIA3-208	ENST00000602726	PELP1	Q8IZL8	1130 aa	Known RBP	28.87	■■■□□ 2.21
PPFIA3-208	ENST00000602726	COL15A1	P39059	1388 aa		28.87	■■■□□ 2.21
PPFIA3-208	ENST00000602726	RIPK4	P57078	832 aa		28.86	■■■□□ 2.21
PPFIA3-208	ENST00000602726	PNISR	Q8TF01	805 aa	Known RBP	28.86	■■■□□ 2.21
PPFIA3-208	ENST00000602726	FKBP8	Q14318	412 aa		28.85	■■■□□ 2.21
PPFIA3-208	ENST00000602726	CCDC146	Q8IYE0	955 aa		28.85	■■■□□ 2.21
PPFIA3-208	ENST00000602726	THUMPD2	Q9BTF0	503 aa	Known RBP	28.85	■■■□□ 2.21
PPFIA3-208	ENST00000602726	MIS18A	Q9NYP9	233 aa		28.85	■■■□□ 2.21
PPFIA3-208	ENST00000602726	PARP3	Q9Y6F1	533 aa		28.85	■■■□□ 2.21
PPFIA3-208	ENST00000602726	SNRPA1	P09661	255 aa	Known RBP	28.84	■■■□□ 2.21
PPFIA3-208	ENST00000602726	USPL1	Q5W0Q7	1092 aa		28.84	■■■□□ 2.21
PPFIA3-208	ENST00000602726	TMPO	P42166	694 aa	Known RBP	28.83	■■■□□ 2.21
PPFIA3-208	ENST00000602726	NARF	Q9UHQ1	456 aa		28.83	■■■□□ 2.21
PPFIA3-208	ENST00000602726	ADAMTS8	Q9UP79	889 aa		28.83	■■■□□ 2.21
PPFIA3-208	ENST00000602726		A0A087WZG4	1122 aa		28.82	■■■□□ 2.2
PPFIA3-208	ENST00000602726	EIF5	P55010	431 aa	Known RBP	28.82	■■■□□ 2.2
PPFIA3-208	ENST00000602726	RUNDC1	Q96C34	613 aa		28.82	■■■□□ 2.2
PPFIA3-208	ENST00000602726	A1BG	P04217	495 aa		28.81	■■■□□ 2.2
PPFIA3-208	ENST00000602726	LMOD3	Q0VAK6	560 aa		28.81	■■■□□ 2.2
PPFIA3-208	ENST00000602726	NPM2	Q86SE8	214 aa	Known RBP	28.81	■■■□□ 2.2
PPFIA3-208	ENST00000602726	ZNF330	Q9Y3S2	320 aa	Predicted RBP	28.81	■■■□□ 2.2
PPFIA3-208	ENST00000602726	USP16	Q9Y5T5	823 aa		28.81	■■■□□ 2.2
PPFIA3-208	ENST00000602726	YY1	P25490	414 aa		28.8	■■■□□ 2.2
PPFIA3-208	ENST00000602726	UTRN	P46939	3433 aa		28.79	■■■□□ 2.2
PPFIA3-208	ENST00000602726	PRAMEF22	A3QJZ6	481 aa		28.79	■■■□□ 2.2
PPFIA3-208	ENST00000602726	IL6ST	P40189	918 aa	Predicted RBP	28.79	■■■□□ 2.2
PPFIA3-208	ENST00000602726	RRP7A	Q9Y3A4	280 aa	Known RBP	28.79	■■■□□ 2.2
PPFIA3-208	ENST00000602726	NEUROD2	Q15784	382 aa		28.78	■■■□□ 2.2
PPFIA3-208	ENST00000602726	GOLGB1	Q14789	3259 aa	Known RBP	28.77	■■■□□ 2.2
PPFIA3-208	ENST00000602726	TM4SF1	P30408	202 aa		28.76	■■■□□ 2.19
PPFIA3-208	ENST00000602726	DDR1	Q08345	913 aa		28.76	■■■□□ 2.19
PPFIA3-208	ENST00000602726	GRIN3B	O60391	1043 aa		28.74	■■■□□ 2.19
PPFIA3-208	ENST00000602726	YBX3	P16989	372 aa	Known RBP eCLIP	28.74	■■■□□ 2.19
PPFIA3-208	ENST00000602726	BCL2L12	Q9HB09	334 aa		28.74	■■■□□ 2.19
PPFIA3-208	ENST00000602726	TBC1D2B	Q9UPU7	963 aa		28.74	■■■□□ 2.19
PPFIA3-208	ENST00000602726	C10orf71	Q711Q0	1435 aa		28.74	■■■□□ 2.19
PPFIA3-208	ENST00000602726	KDM3B	Q7LBC6	1761 aa		28.73	■■■□□ 2.19
PPFIA3-208	ENST00000602726	POLRMT	O00411	1230 aa	Known RBP	28.73	■■■□□ 2.19
PPFIA3-208	ENST00000602726	ANP32C	O43423	234 aa		28.73	■■■□□ 2.19
PPFIA3-208	ENST00000602726	EIF4A1	P60842	406 aa	Known RBP	28.73	■■■□□ 2.19
PPFIA3-208	ENST00000602726	TGFB2	P61812	414 aa		28.73	■■■□□ 2.19
PPFIA3-208	ENST00000602726	TSPYL4	Q9UJ04	414 aa		28.73	■■■□□ 2.19
PPFIA3-208	ENST00000602726	PIP4K2A	P48426	406 aa	Predicted RBP	28.72	■■■□□ 2.19
PPFIA3-208	ENST00000602726	NFIX	Q14938	502 aa		28.72	■■■□□ 2.19
PPFIA3-208	ENST00000602726	KIF13B	Q9NQT8	1826 aa		28.71	■■■□□ 2.19
PPFIA3-208	ENST00000602726	WWC3	Q9ULE0	1092 aa		28.71	■■■□□ 2.19
PPFIA3-208	ENST00000602726	GIGYF1	O75420	1035 aa	Predicted RBP	28.7	■■■□□ 2.18
PPFIA3-208	ENST00000602726	DZIP3	Q86Y13	1208 aa	Known RBP	28.69	■■■□□ 2.18
PPFIA3-208	ENST00000602726	BABAM1	Q9NWV8	329 aa		28.69	■■■□□ 2.18
PPFIA3-208	ENST00000602726	PXDNL	A1KZ92	1463 aa		28.68	■■■□□ 2.18
PPFIA3-208	ENST00000602726		A0A0G2JLW4	131 aa		28.68	■■■□□ 2.18
PPFIA3-208	ENST00000602726	BICDL1	Q6ZP65	573 aa		28.68	■■■□□ 2.18
PPFIA3-208	ENST00000602726	TRIM35	Q9UPQ4	493 aa		28.68	■■■□□ 2.18
PPFIA3-208	ENST00000602726	CHD4	Q14839	1912 aa		28.68	■■■□□ 2.18
PPFIA3-208	ENST00000602726	CCDC184	Q52MB2	194 aa		28.67	■■■□□ 2.18
PPFIA3-208	ENST00000602726	NBPF26	B4DH59	902 aa		28.66	■■■□□ 2.18
PPFIA3-208	ENST00000602726	CAMTA2	O94983	1202 aa		28.66	■■■□□ 2.18
PPFIA3-208	ENST00000602726	SERPINB2	P05120	415 aa		28.66	■■■□□ 2.18
PPFIA3-208	ENST00000602726	NBPF10	Q6P3W6	841 aa	Known RBP	28.66	■■■□□ 2.18
PPFIA3-208	ENST00000602726	NBPF15	Q8N660	670 aa		28.66	■■■□□ 2.18
PPFIA3-208	ENST00000602726	DPEP1	P16444	411 aa		28.65	■■■□□ 2.18
PPFIA3-208	ENST00000602726	TBC1D9B	Q66K14	1250 aa		28.65	■■■□□ 2.18
PPFIA3-208	ENST00000602726	LAMB4	A4D0S4	1761 aa		28.64	■■■□□ 2.18
PPFIA3-208	ENST00000602726	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.64	■■■□□ 2.18
PPFIA3-208	ENST00000602726	SCN7A	Q01118	1682 aa		28.64	■■■□□ 2.17
PPFIA3-208	ENST00000602726	APAF1	O14727	1248 aa		28.63	■■■□□ 2.17
PPFIA3-208	ENST00000602726	LAS1L	Q9Y4W2	734 aa	Known RBP	28.63	■■■□□ 2.17
PPFIA3-208	ENST00000602726	KIAA1551	Q9HCM1	1747 aa		28.62	■■■□□ 2.17
PPFIA3-208	ENST00000602726	MRS2	Q9HD23	443 aa		28.61	■■■□□ 2.17
PPFIA3-208	ENST00000602726	AFDN	P55196	1824 aa	Known RBP	28.6	■■■□□ 2.17
PPFIA3-208	ENST00000602726	CHL1	O00533	1208 aa		28.6	■■■□□ 2.17
PPFIA3-208	ENST00000602726	SETDB2	Q96T68	719 aa		28.6	■■■□□ 2.17
PPFIA3-208	ENST00000602726	BCS1L	Q9Y276	419 aa		28.6	■■■□□ 2.17
PPFIA3-208	ENST00000602726	ZNF652	Q9Y2D9	606 aa		28.6	■■■□□ 2.17
PPFIA3-208	ENST00000602726	CLEC4G	Q6UXB4	293 aa		28.59	■■■□□ 2.17
PPFIA3-208	ENST00000602726	NGEF	Q8N5V2	710 aa		28.59	■■■□□ 2.17
PPFIA3-208	ENST00000602726	CARMIL3	Q8ND23	1372 aa		28.59	■■■□□ 2.17
PPFIA3-208	ENST00000602726	KCNA3	P22001	575 aa		28.58	■■■□□ 2.17
PPFIA3-208	ENST00000602726	NRXN2	Q9P2S2	1712 aa		28.57	■■■□□ 2.16
PPFIA3-208	ENST00000602726	MYL6B	P14649	208 aa		28.57	■■■□□ 2.16
PPFIA3-208	ENST00000602726	CHRNA5	P30532	468 aa		28.57	■■■□□ 2.16
PPFIA3-208	ENST00000602726	PIM2	Q9P1W9	311 aa		28.57	■■■□□ 2.16
PPFIA3-208	ENST00000602726	BCOR	Q6W2J9	1755 aa		28.57	■■■□□ 2.16
PPFIA3-208	ENST00000602726	EIF2S2	P20042	333 aa	Known RBP	28.56	■■■□□ 2.16
PPFIA3-208	ENST00000602726	ERBB4	Q15303	1308 aa		28.55	■■■□□ 2.16
PPFIA3-208	ENST00000602726	RGL2	O15211	777 aa		28.54	■■■□□ 2.16
PPFIA3-208	ENST00000602726	NPHP1	O15259	732 aa		28.54	■■■□□ 2.16
PPFIA3-208	ENST00000602726	CALD1	Q05682	793 aa	Known RBP	28.54	■■■□□ 2.16
PPFIA3-208	ENST00000602726	CFAP44	Q96MT7	982 aa		28.54	■■■□□ 2.16
PPFIA3-208	ENST00000602726	DALRD3	Q5D0E6	543 aa	Known RBP	28.52	■■■□□ 2.16
PPFIA3-208	ENST00000602726	PRR5L	Q6MZQ0	368 aa		28.52	■■■□□ 2.16
PPFIA3-208	ENST00000602726	KIF6	Q6ZMV9	814 aa		28.52	■■■□□ 2.16
PPFIA3-208	ENST00000602726	CNBD1	Q8NA66	436 aa		28.52	■■■□□ 2.16
PPFIA3-208	ENST00000602726	ZNF784	Q8NCA9	323 aa	Predicted RBP	28.52	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms