RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 CCDC121Q6ZUS5 278 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 PNISRQ8TF01 805 aaKnown RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 MCM3P25205 808 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 U2AF2P26368 475 aaKnown RBP eCLIP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 TATP17735 454 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 IL1RAPL2Q9NP60 686 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 PPP6R1Q9UPN7 881 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 PTPN23Q9H3S7 1636 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 SMC1AQ14683 1233 aaKnown RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 LRCH2Q5VUJ6 765 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 TTC12Q9H892 705 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 PHACTR2O75167 634 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 HCLS1P14317 486 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 ZNF397Q8NF99 534 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 SMTNL1A8MU46 457 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 NSD3Q9BZ95 1437 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 BAG4O95429 457 aaKnown RBP10.06□□□□□ -0.8
CSMD1-216ENST00000602557 C20orf194Q5TEA3 1177 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 NUTM1Q86Y26 1132 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 ARFGAP3Q9NP61 516 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 BTBD11A6QL63 1104 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 GOLIM4O00461 696 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 TMEM57Q8N5G2 664 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 RSRC1Q96IZ7 334 aaKnown RBP10.06□□□□□ -0.8
CSMD1-216ENST00000602557 MIS18AQ9NYP9 233 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 SEPT6Q14141 434 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 AFAP1Q8N556 730 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 CPLX3Q8WVH0 158 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 KLHL10Q6JEL2 608 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 KIF20AO95235 890 aa10.06□□□□□ -0.8
CSMD1-216ENST00000602557 ZSCAN31Q96LW9 406 aaPredicted RBP10.06□□□□□ -0.8
CSMD1-216ENST00000602557 HFM1A2PYH4 1435 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 FAM135AQ9P2D6 1515 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 C17orf53Q8N3J3 647 aaPredicted RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 CCDC171Q6TFL3 1326 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 HLTFQ14527 1009 aaKnown RBP eCLIP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 CCDC12Q8WUD4 166 aaPredicted RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 MYCBPQ99417 103 aaPredicted RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 DDX54Q8TDD1 881 aaKnown RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 ATRIPQ8WXE1 791 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 FAM160A1Q05DH4 1040 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 EXOC6BQ9Y2D4 811 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 GIGYF2Q6Y7W6 1299 aaKnown RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 OSCARQ8IYS5 282 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 CEP112Q8N8E3 955 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 CTNNA3Q9UI47 895 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 SMARCA5O60264 1052 aaPredicted RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 CCDC6Q16204 474 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 TOM1L2Q6ZVM7 507 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 OTUD6BQ8N6M0 293 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 GNG11P61952 73 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 KRT32Q14532 448 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 ZSCAN25Q6NSZ9 544 aa10.05□□□□□ -0.8
CSMD1-216ENST00000602557 PUS7Q96PZ0 661 aaKnown RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 BMP2KQ9NSY1 1161 aaPredicted RBP10.05□□□□□ -0.8
CSMD1-216ENST00000602557 PHF23Q9BUL5 403 aaPredicted RBP10.04□□□□□ -0.8
CSMD1-216ENST00000602557 IDH1O75874 414 aaKnown RBP10.04□□□□□ -0.8
CSMD1-216ENST00000602557 BIN1O00499 593 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 SPECC1LQ69YQ0 1117 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 CCDC114Q96M63 670 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 LRP2BPQ9P2M1 347 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 ZKSCAN5Q9Y2L8 839 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 RTEL1-TNFRSF6BF6WH68 1400 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 ZNF76P36508 570 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 IMMTQ16891 758 aaKnown RBP10.04□□□□□ -0.8
CSMD1-216ENST00000602557 DAAM2Q86T65 1068 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 RABEP2Q9H5N1 569 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 SPA17Q15506 151 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 PRPF40BQ6NWY9 871 aaKnown RBP10.04□□□□□ -0.8
CSMD1-216ENST00000602557 WASF1Q92558 559 aa10.04□□□□□ -0.8
CSMD1-216ENST00000602557 HSF2BPO75031 334 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 USP5P45974 858 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 AIDAQ96BJ3 306 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 NKTRP30414 1462 aaKnown RBP10.03□□□□□ -0.8
CSMD1-216ENST00000602557 ANKRD30BQ9BXX2 1392 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 POLA1P09884 1462 aaPredicted RBP10.03□□□□□ -0.8
CSMD1-216ENST00000602557 STX1AQ16623 288 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 CEP83Q9Y592 693 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 EBAG9O00559 213 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 MX1P20591 662 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 NBPF8Q3BBV2 869 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 PAIP2Q9BPZ3 127 aaKnown RBP10.03□□□□□ -0.8
CSMD1-216ENST00000602557 MAP2K2P36507 400 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 THUMPD2Q9BTF0 503 aaKnown RBP10.03□□□□□ -0.8
CSMD1-216ENST00000602557 NEMFO60524 1076 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 GIMAP6Q6P9H5 292 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 CCDC83Q8IWF9 413 aa10.03□□□□□ -0.8
CSMD1-216ENST00000602557 SUDS3Q9H7L9 328 aaPredicted RBP10.03□□□□□ -0.8
CSMD1-216ENST00000602557 SEC63Q9UGP8 760 aaKnown RBP10.03□□□□□ -0.8
CSMD1-216ENST00000602557 SPG7Q9UQ90 795 aa10.02□□□□□ -0.8
CSMD1-216ENST00000602557 U3KPZ7 1027 aaPredicted RBP10.02□□□□□ -0.8
CSMD1-216ENST00000602557 DNAI1Q9UI46 699 aa10.02□□□□□ -0.8
CSMD1-216ENST00000602557 PROSER2Q86WR7 435 aaPredicted RBP10.02□□□□□ -0.8
CSMD1-216ENST00000602557 MIPOL1Q8TD10 442 aa10.02□□□□□ -0.8
CSMD1-216ENST00000602557 LARP6Q9BRS8 491 aaKnown RBP10.02□□□□□ -0.8
CSMD1-216ENST00000602557 TOP2BQ02880 1626 aa10.02□□□□□ -0.8
CSMD1-216ENST00000602557 PCF11O94913 1555 aaKnown RBP10.02□□□□□ -0.81
CSMD1-216ENST00000602557 FRMD3A2A2Y4 597 aa10.02□□□□□ -0.81
CSMD1-216ENST00000602557 ISM2Q6H9L7 571 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms