RNA–Protein interactions for RNA: ENST00000599398.5

CCDC9-204, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-204ENST00000599398 TEX13AQ9BXU3 409 aaPredicted RBP29.89■■■□□ 2.38
CCDC9-204ENST00000599398 CANXP27824 592 aaKnown RBP29.88■■■□□ 2.37
CCDC9-204ENST00000599398 USP42Q9H9J4 1324 aaKnown RBP29.88■■■□□ 2.37
CCDC9-204ENST00000599398 UTRNP46939 3433 aa29.87■■■□□ 2.37
CCDC9-204ENST00000599398 ZPR1O75312 459 aa29.87■■■□□ 2.37
CCDC9-204ENST00000599398 WDR43Q15061 677 aaKnown RBP eCLIP29.86■■■□□ 2.37
CCDC9-204ENST00000599398 TAF7Q15545 349 aaPredicted RBP29.86■■■□□ 2.37
CCDC9-204ENST00000599398 COL15A1P39059 1388 aa29.86■■■□□ 2.37
CCDC9-204ENST00000599398 GOLGB1Q14789 3259 aaKnown RBP29.85■■■□□ 2.37
CCDC9-204ENST00000599398 YY1P25490 414 aa29.85■■■□□ 2.37
CCDC9-204ENST00000599398 ZNF316A6NFI3 1004 aaPredicted RBP29.84■■■□□ 2.37
CCDC9-204ENST00000599398 PARP3Q9Y6F1 533 aa29.84■■■□□ 2.37
CCDC9-204ENST00000599398 FKBP8Q14318 412 aa29.83■■■□□ 2.37
CCDC9-204ENST00000599398 USPL1Q5W0Q7 1092 aa29.83■■■□□ 2.37
CCDC9-204ENST00000599398 THUMPD2Q9BTF0 503 aaKnown RBP29.82■■■□□ 2.36
CCDC9-204ENST00000599398 MIS18AQ9NYP9 233 aa29.82■■■□□ 2.36
CCDC9-204ENST00000599398 ZNF330Q9Y3S2 320 aaPredicted RBP29.82■■■□□ 2.36
CCDC9-204ENST00000599398 CCDC146Q8IYE0 955 aa29.81■■■□□ 2.36
CCDC9-204ENST00000599398 RIPK4P57078 832 aa29.8■■■□□ 2.36
CCDC9-204ENST00000599398 NARFQ9UHQ1 456 aa29.8■■■□□ 2.36
CCDC9-204ENST00000599398 SNRPA1P09661 255 aaKnown RBP29.79■■■□□ 2.36
CCDC9-204ENST00000599398 PNISRQ8TF01 805 aaKnown RBP29.79■■■□□ 2.36
CCDC9-204ENST00000599398 CHD4Q14839 1912 aa29.79■■■□□ 2.36
CCDC9-204ENST00000599398 A1BGP04217 495 aa29.78■■■□□ 2.36
CCDC9-204ENST00000599398 EIF5P55010 431 aaKnown RBP29.78■■■□□ 2.36
CCDC9-204ENST00000599398 USP16Q9Y5T5 823 aa29.78■■■□□ 2.36
CCDC9-204ENST00000599398 A0A087WZG4 1122 aa29.77■■■□□ 2.36
CCDC9-204ENST00000599398 PRAMEF22A3QJZ6 481 aa29.77■■■□□ 2.36
CCDC9-204ENST00000599398 NPM2Q86SE8 214 aaKnown RBP29.77■■■□□ 2.36
CCDC9-204ENST00000599398 YBX3P16989 372 aaKnown RBP eCLIP29.76■■■□□ 2.35
CCDC9-204ENST00000599398 TMPOP42166 694 aaKnown RBP29.76■■■□□ 2.35
CCDC9-204ENST00000599398 WWC3Q9ULE0 1092 aa29.76■■■□□ 2.35
CCDC9-204ENST00000599398 ADAMTS8Q9UP79 889 aa29.76■■■□□ 2.35
CCDC9-204ENST00000599398 KIF13BQ9NQT8 1826 aa29.75■■■□□ 2.35
CCDC9-204ENST00000599398 IL6STP40189 918 aaPredicted RBP29.75■■■□□ 2.35
CCDC9-204ENST00000599398 DDR1Q08345 913 aa29.75■■■□□ 2.35
CCDC9-204ENST00000599398 RRP7AQ9Y3A4 280 aaKnown RBP29.75■■■□□ 2.35
CCDC9-204ENST00000599398 C10orf71Q711Q0 1435 aa29.74■■■□□ 2.35
CCDC9-204ENST00000599398 NEUROD2Q15784 382 aa29.74■■■□□ 2.35
CCDC9-204ENST00000599398 RUNDC1Q96C34 613 aa29.74■■■□□ 2.35
CCDC9-204ENST00000599398 KDM3BQ7LBC6 1761 aa29.74■■■□□ 2.35
CCDC9-204ENST00000599398 GRIN3BO60391 1043 aa29.73■■■□□ 2.35
CCDC9-204ENST00000599398 LMOD3Q0VAK6 560 aa29.73■■■□□ 2.35
CCDC9-204ENST00000599398 TM4SF1P30408 202 aa29.72■■■□□ 2.35
CCDC9-204ENST00000599398 PIP4K2AP48426 406 aaPredicted RBP29.72■■■□□ 2.35
CCDC9-204ENST00000599398 TBC1D2BQ9UPU7 963 aa29.72■■■□□ 2.35
CCDC9-204ENST00000599398 POLRMTO00411 1230 aaKnown RBP29.71■■■□□ 2.35
CCDC9-204ENST00000599398 BCL2L12Q9HB09 334 aa29.71■■■□□ 2.35
CCDC9-204ENST00000599398 N4BP2Q86UW6 1770 aaPredicted RBP29.71■■■□□ 2.35
CCDC9-204ENST00000599398 TGFB2P61812 414 aa29.7■■■□□ 2.35
CCDC9-204ENST00000599398 NFIXQ14938 502 aa29.7■■■□□ 2.35
CCDC9-204ENST00000599398 PXDNLA1KZ92 1463 aa29.69■■■□□ 2.34
CCDC9-204ENST00000599398 A0A0G2JLW4 131 aa29.68■■■□□ 2.34
CCDC9-204ENST00000599398 BICDL1Q6ZP65 573 aa29.68■■■□□ 2.34
CCDC9-204ENST00000599398 TSPYL4Q9UJ04 414 aa29.68■■■□□ 2.34
CCDC9-204ENST00000599398 EIF4A1P60842 406 aaKnown RBP29.67■■■□□ 2.34
CCDC9-204ENST00000599398 LAMB4A4D0S4 1761 aa29.67■■■□□ 2.34
CCDC9-204ENST00000599398 SCN7AQ01118 1682 aa29.66■■■□□ 2.34
CCDC9-204ENST00000599398 KIAA1551Q9HCM1 1747 aa29.66■■■□□ 2.34
CCDC9-204ENST00000599398 AFDNP55196 1824 aaKnown RBP29.66■■■□□ 2.34
CCDC9-204ENST00000599398 DPEP1P16444 411 aa29.65■■■□□ 2.34
CCDC9-204ENST00000599398 DZIP3Q86Y13 1208 aaKnown RBP29.65■■■□□ 2.34
CCDC9-204ENST00000599398 GIGYF1O75420 1035 aaPredicted RBP29.64■■■□□ 2.34
CCDC9-204ENST00000599398 ANP32CO43423 234 aa29.63■■■□□ 2.33
CCDC9-204ENST00000599398 SERPINB2P05120 415 aa29.63■■■□□ 2.33
CCDC9-204ENST00000599398 TBC1D9BQ66K14 1250 aa29.63■■■□□ 2.33
CCDC9-204ENST00000599398 NBPF26B4DH59 902 aa29.62■■■□□ 2.33
CCDC9-204ENST00000599398 NBPF10Q6P3W6 841 aaKnown RBP29.62■■■□□ 2.33
CCDC9-204ENST00000599398 NBPF15Q8N660 670 aa29.62■■■□□ 2.33
CCDC9-204ENST00000599398 CAMTA2O94983 1202 aa29.61■■■□□ 2.33
CCDC9-204ENST00000599398 TRIM35Q9UPQ4 493 aa29.61■■■□□ 2.33
CCDC9-204ENST00000599398 CCDC184Q52MB2 194 aa29.6■■■□□ 2.33
CCDC9-204ENST00000599398 BABAM1Q9NWV8 329 aa29.6■■■□□ 2.33
CCDC9-204ENST00000599398 BCS1LQ9Y276 419 aa29.6■■■□□ 2.33
CCDC9-204ENST00000599398 BCORQ6W2J9 1755 aa29.59■■■□□ 2.33
CCDC9-204ENST00000599398 LAS1LQ9Y4W2 734 aaKnown RBP29.59■■■□□ 2.33
CCDC9-204ENST00000599398 NRXN2Q9P2S2 1712 aa29.59■■■□□ 2.33
CCDC9-204ENST00000599398 BRCA1P38398 1863 aaKnown RBP29.57■■■□□ 2.32
CCDC9-204ENST00000599398 APAF1O14727 1248 aa29.56■■■□□ 2.32
CCDC9-204ENST00000599398 CHRNA5P30532 468 aa29.56■■■□□ 2.32
CCDC9-204ENST00000599398 NGEFQ8N5V2 710 aa29.56■■■□□ 2.32
CCDC9-204ENST00000599398 SETDB2Q96T68 719 aa29.56■■■□□ 2.32
CCDC9-204ENST00000599398 PIM2Q9P1W9 311 aa29.56■■■□□ 2.32
CCDC9-204ENST00000599398 ZNF652Q9Y2D9 606 aa29.56■■■□□ 2.32
CCDC9-204ENST00000599398 CARMIL3Q8ND23 1372 aa29.55■■■□□ 2.32
CCDC9-204ENST00000599398 KCNA3P22001 575 aa29.55■■■□□ 2.32
CCDC9-204ENST00000599398 ZNF784Q8NCA9 323 aaPredicted RBP29.55■■■□□ 2.32
CCDC9-204ENST00000599398 NPHP1O15259 732 aa29.54■■■□□ 2.32
CCDC9-204ENST00000599398 MYL6BP14649 208 aa29.53■■■□□ 2.32
CCDC9-204ENST00000599398 CLEC4GQ6UXB4 293 aa29.53■■■□□ 2.32
CCDC9-204ENST00000599398 CHL1O00533 1208 aa29.52■■■□□ 2.32
CCDC9-204ENST00000599398 EIF2S2P20042 333 aaKnown RBP29.52■■■□□ 2.32
CCDC9-204ENST00000599398 MRS2Q9HD23 443 aa29.52■■■□□ 2.32
CCDC9-204ENST00000599398 DALRD3Q5D0E6 543 aaKnown RBP29.51■■■□□ 2.31
CCDC9-204ENST00000599398 CCDC24Q8N4L8 307 aa29.5■■■□□ 2.31
CCDC9-204ENST00000599398 PRR5LQ6MZQ0 368 aa29.49■■■□□ 2.31
CCDC9-204ENST00000599398 CNBD1Q8NA66 436 aa29.49■■■□□ 2.31
CCDC9-204ENST00000599398 ERBB4Q15303 1308 aa29.48■■■□□ 2.31
CCDC9-204ENST00000599398 KIF6Q6ZMV9 814 aa29.48■■■□□ 2.31
CCDC9-204ENST00000599398 ARHGAP27Q6ZUM4 889 aa29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms