RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 PLEKHF1Q96S99 279 aa20.03■□□□□ 0.8
LIG1-215ENST00000597901 HEG1Q9ULI3 1381 aa20.03■□□□□ 0.8
LIG1-215ENST00000597901 A0A0G2JLW4 131 aa20.02■□□□□ 0.8
LIG1-215ENST00000597901 EIF5P55010 431 aaKnown RBP20.02■□□□□ 0.8
LIG1-215ENST00000597901 DDR1Q08345 913 aa20.01■□□□□ 0.79
LIG1-215ENST00000597901 TAF7Q15545 349 aaPredicted RBP20.01■□□□□ 0.79
LIG1-215ENST00000597901 PNNQ9H307 717 aaKnown RBP20.01■□□□□ 0.79
LIG1-215ENST00000597901 TJP1Q07157 1748 aa20■□□□□ 0.79
LIG1-215ENST00000597901 BCL2L12Q9HB09 334 aa20■□□□□ 0.79
LIG1-215ENST00000597901 CHD4Q14839 1912 aa20■□□□□ 0.79
LIG1-215ENST00000597901 A0A087WZG4 1122 aa19.99■□□□□ 0.79
LIG1-215ENST00000597901 A1BGP04217 495 aa19.99■□□□□ 0.79
LIG1-215ENST00000597901 DPEP1P16444 411 aa19.99■□□□□ 0.79
LIG1-215ENST00000597901 USP16Q9Y5T5 823 aa19.99■□□□□ 0.79
LIG1-215ENST00000597901 COL15A1P39059 1388 aa19.98■□□□□ 0.79
LIG1-215ENST00000597901 POLRMTO00411 1230 aaKnown RBP19.98■□□□□ 0.79
LIG1-215ENST00000597901 NFIXQ14938 502 aa19.98■□□□□ 0.79
LIG1-215ENST00000597901 MIS18AQ9NYP9 233 aa19.98■□□□□ 0.79
LIG1-215ENST00000597901 CICQ96RK0 1608 aaPredicted RBP19.98■□□□□ 0.79
LIG1-215ENST00000597901 UTRNP46939 3433 aa19.97■□□□□ 0.79
LIG1-215ENST00000597901 IL6STP40189 918 aaPredicted RBP19.97■□□□□ 0.79
LIG1-215ENST00000597901 NFE2L2Q16236 605 aa19.97■□□□□ 0.79
LIG1-215ENST00000597901 SNRPA1P09661 255 aaKnown RBP19.96■□□□□ 0.79
LIG1-215ENST00000597901 KCNA3P22001 575 aa19.96■□□□□ 0.79
LIG1-215ENST00000597901 TBC1D2BQ9UPU7 963 aa19.96■□□□□ 0.79
LIG1-215ENST00000597901 C10orf71Q711Q0 1435 aa19.95■□□□□ 0.78
LIG1-215ENST00000597901 PRAMEF22A3QJZ6 481 aa19.95■□□□□ 0.78
LIG1-215ENST00000597901 BCS1LQ9Y276 419 aa19.95■□□□□ 0.78
LIG1-215ENST00000597901 ZNF330Q9Y3S2 320 aaPredicted RBP19.95■□□□□ 0.78
LIG1-215ENST00000597901 PXDNLA1KZ92 1463 aa19.94■□□□□ 0.78
LIG1-215ENST00000597901 GIGYF1O75420 1035 aaPredicted RBP19.94■□□□□ 0.78
LIG1-215ENST00000597901 SERPINB2P05120 415 aa19.94■□□□□ 0.78
LIG1-215ENST00000597901 MYBBP1AQ9BQG0 1328 aaKnown RBP19.94■□□□□ 0.78
LIG1-215ENST00000597901 MAPK8IP3Q9UPT6 1336 aa19.94■□□□□ 0.78
LIG1-215ENST00000597901 NPM2Q86SE8 214 aaKnown RBP19.93■□□□□ 0.78
LIG1-215ENST00000597901 PNISRQ8TF01 805 aaKnown RBP19.93■□□□□ 0.78
LIG1-215ENST00000597901 BICDL1Q6ZP65 573 aa19.92■□□□□ 0.78
LIG1-215ENST00000597901 THUMPD2Q9BTF0 503 aaKnown RBP19.92■□□□□ 0.78
LIG1-215ENST00000597901 PIM2Q9P1W9 311 aa19.92■□□□□ 0.78
LIG1-215ENST00000597901 C4AP0C0L4 1744 aa19.91■□□□□ 0.78
LIG1-215ENST00000597901 PIP4K2AP48426 406 aaPredicted RBP19.91■□□□□ 0.78
LIG1-215ENST00000597901 C1QTNF8P60827 252 aa19.91■□□□□ 0.78
LIG1-215ENST00000597901 UBR2Q8IWV8 1755 aa19.9■□□□□ 0.78
LIG1-215ENST00000597901 CHRNA5P30532 468 aa19.9■□□□□ 0.78
LIG1-215ENST00000597901 ZEB1P37275 1124 aaPredicted RBP19.9■□□□□ 0.78
LIG1-215ENST00000597901 RIPK4P57078 832 aa19.9■□□□□ 0.78
LIG1-215ENST00000597901 TBC1D9BQ66K14 1250 aa19.9■□□□□ 0.78
LIG1-215ENST00000597901 VIRMAQ69YN4 1812 aaKnown RBP19.9■□□□□ 0.78
LIG1-215ENST00000597901 ARHGAP27Q6ZUM4 889 aa19.89■□□□□ 0.77
LIG1-215ENST00000597901 PRKRIP1Q9H875 184 aaPredicted RBP19.89■□□□□ 0.77
LIG1-215ENST00000597901 SIPA1L3O60292 1781 aaPredicted RBP19.88■□□□□ 0.77
LIG1-215ENST00000597901 NBPF26B4DH59 902 aa19.88■□□□□ 0.77
LIG1-215ENST00000597901 CAMTA2O94983 1202 aa19.88■□□□□ 0.77
LIG1-215ENST00000597901 TMPOP42166 694 aaKnown RBP19.88■□□□□ 0.77
LIG1-215ENST00000597901 DALRD3Q5D0E6 543 aaKnown RBP19.88■□□□□ 0.77
LIG1-215ENST00000597901 NBPF10Q6P3W6 841 aaKnown RBP19.88■□□□□ 0.77
LIG1-215ENST00000597901 DZIP3Q86Y13 1208 aaKnown RBP19.88■□□□□ 0.77
LIG1-215ENST00000597901 NBPF15Q8N660 670 aa19.88■□□□□ 0.77
LIG1-215ENST00000597901 SENP3-EIF4A1A0A087X0R7 540 aa19.87■□□□□ 0.77
LIG1-215ENST00000597901 EIF4A1P60842 406 aaKnown RBP19.87■□□□□ 0.77
LIG1-215ENST00000597901 SETDB2Q96T68 719 aa19.86■□□□□ 0.77
LIG1-215ENST00000597901 ADAMTS8Q9UP79 889 aa19.86■□□□□ 0.77
LIG1-215ENST00000597901 GOLGB1Q14789 3259 aaKnown RBP19.86■□□□□ 0.77
LIG1-215ENST00000597901 CCDC146Q8IYE0 955 aa19.85■□□□□ 0.77
LIG1-215ENST00000597901 GPBP1L1Q9HC44 474 aaPredicted RBP19.85■□□□□ 0.77
LIG1-215ENST00000597901 ATP10DQ9P241 1426 aa19.85■□□□□ 0.77
LIG1-215ENST00000597901 KIF13BQ9NQT8 1826 aa19.84■□□□□ 0.77
LIG1-215ENST00000597901 WDR43Q15061 677 aaKnown RBP eCLIP19.84■□□□□ 0.77
LIG1-215ENST00000597901 CLEC4GQ6UXB4 293 aa19.84■□□□□ 0.77
LIG1-215ENST00000597901 RRP7AQ9Y3A4 280 aaKnown RBP19.84■□□□□ 0.77
LIG1-215ENST00000597901 NEUROD2Q15784 382 aa19.83■□□□□ 0.77
LIG1-215ENST00000597901 C2CD5Q86YS7 1000 aa19.83■□□□□ 0.77
LIG1-215ENST00000597901 RUNDC1Q96C34 613 aa19.83■□□□□ 0.77
LIG1-215ENST00000597901 H0YIN7 160 aa19.82■□□□□ 0.76
LIG1-215ENST00000597901 PRR5LQ6MZQ0 368 aa19.82■□□□□ 0.76
LIG1-215ENST00000597901 CCDC24Q8N4L8 307 aa19.82■□□□□ 0.76
LIG1-215ENST00000597901 BRIP1Q9BX63 1249 aa19.82■□□□□ 0.76
LIG1-215ENST00000597901 TSPYL4Q9UJ04 414 aa19.82■□□□□ 0.76
LIG1-215ENST00000597901 N4BP2Q86UW6 1770 aaPredicted RBP19.81■□□□□ 0.76
LIG1-215ENST00000597901 LMOD3Q0VAK6 560 aa19.81■□□□□ 0.76
LIG1-215ENST00000597901 BABAM1Q9NWV8 329 aa19.81■□□□□ 0.76
LIG1-215ENST00000597901 KIAA1551Q9HCM1 1747 aa19.81■□□□□ 0.76
LIG1-215ENST00000597901 PDE6BP35913 854 aa19.8■□□□□ 0.76
LIG1-215ENST00000597901 NGEFQ8N5V2 710 aa19.8■□□□□ 0.76
LIG1-215ENST00000597901 TTLL6Q8N841 843 aa19.8■□□□□ 0.76
LIG1-215ENST00000597901 ZNF526Q8TF50 670 aaPredicted RBP19.8■□□□□ 0.76
LIG1-215ENST00000597901 ZNF652Q9Y2D9 606 aa19.8■□□□□ 0.76
LIG1-215ENST00000597901 ADCY9O60503 1353 aa19.8■□□□□ 0.76
LIG1-215ENST00000597901 RGL2O15211 777 aa19.79■□□□□ 0.76
LIG1-215ENST00000597901 TRIM35Q9UPQ4 493 aa19.79■□□□□ 0.76
LIG1-215ENST00000597901 PDZRN3Q9UPQ7 1066 aa19.79■□□□□ 0.76
LIG1-215ENST00000597901 CARMIL3Q8ND23 1372 aa19.79■□□□□ 0.76
LIG1-215ENST00000597901 HLFQ16534 295 aa19.78■□□□□ 0.76
LIG1-215ENST00000597901 NPHP1O15259 732 aa19.77■□□□□ 0.76
LIG1-215ENST00000597901 C9orf131Q5VYM1 1079 aa19.77■□□□□ 0.76
LIG1-215ENST00000597901 CNBD1Q8NA66 436 aa19.77■□□□□ 0.76
LIG1-215ENST00000597901 ZNF622Q969S3 477 aaKnown RBP eCLIP19.77■□□□□ 0.76
LIG1-215ENST00000597901 MYL6BP14649 208 aa19.76■□□□□ 0.75
LIG1-215ENST00000597901 NBPF5PQ86XG9 351 aaPredicted RBP19.76■□□□□ 0.75
LIG1-215ENST00000597901 NIP7Q9Y221 180 aaKnown RBP eCLIP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms