RNA–Protein interactions for RNA: ENST00000596136.5

USE1-207, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 1 (best) BASIC

Gene USE1, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-207ENST00000596136 KLHL34Q8N239 644 aa17.29■□□□□ 0.36
USE1-207ENST00000596136 EIF5P55010 431 aaKnown RBP17.28■□□□□ 0.36
USE1-207ENST00000596136 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.36
USE1-207ENST00000596136 SRP68Q9UHB9 627 aaKnown RBP17.27■□□□□ 0.36
USE1-207ENST00000596136 NARFQ9UHQ1 456 aa17.27■□□□□ 0.36
USE1-207ENST00000596136 COL15A1P39059 1388 aa17.27■□□□□ 0.35
USE1-207ENST00000596136 KIF13BQ9NQT8 1826 aa17.26■□□□□ 0.35
USE1-207ENST00000596136 ZNF316A6NFI3 1004 aaPredicted RBP17.26■□□□□ 0.35
USE1-207ENST00000596136 FKBP8Q14318 412 aa17.26■□□□□ 0.35
USE1-207ENST00000596136 TM4SF1P30408 202 aa17.25■□□□□ 0.35
USE1-207ENST00000596136 PNISRQ8TF01 805 aaKnown RBP17.25■□□□□ 0.35
USE1-207ENST00000596136 ZPR1O75312 459 aa17.24■□□□□ 0.35
USE1-207ENST00000596136 SNRPA1P09661 255 aaKnown RBP17.24■□□□□ 0.35
USE1-207ENST00000596136 CANXP27824 592 aaKnown RBP17.24■□□□□ 0.35
USE1-207ENST00000596136 IL6STP40189 918 aaPredicted RBP17.24■□□□□ 0.35
USE1-207ENST00000596136 TMPOP42166 694 aaKnown RBP17.24■□□□□ 0.35
USE1-207ENST00000596136 GPR162Q16538 588 aa17.24■□□□□ 0.35
USE1-207ENST00000596136 USPL1Q5W0Q7 1092 aa17.24■□□□□ 0.35
USE1-207ENST00000596136 USP16Q9Y5T5 823 aa17.24■□□□□ 0.35
USE1-207ENST00000596136 CHD4Q14839 1912 aa17.23■□□□□ 0.35
USE1-207ENST00000596136 A0A087WZG4 1122 aa17.23■□□□□ 0.35
USE1-207ENST00000596136 BCL2L12Q9HB09 334 aa17.23■□□□□ 0.35
USE1-207ENST00000596136 ADAMTS8Q9UP79 889 aa17.23■□□□□ 0.35
USE1-207ENST00000596136 PARP3Q9Y6F1 533 aa17.23■□□□□ 0.35
USE1-207ENST00000596136 KDM3BQ7LBC6 1761 aa17.23■□□□□ 0.35
USE1-207ENST00000596136 C10orf71Q711Q0 1435 aa17.22■□□□□ 0.35
USE1-207ENST00000596136 A1BGP04217 495 aa17.22■□□□□ 0.35
USE1-207ENST00000596136 RIPK4P57078 832 aa17.22■□□□□ 0.35
USE1-207ENST00000596136 DDR1Q08345 913 aa17.22■□□□□ 0.35
USE1-207ENST00000596136 WDR43Q15061 677 aaKnown RBP eCLIP17.22■□□□□ 0.35
USE1-207ENST00000596136 RUNDC1Q96C34 613 aa17.22■□□□□ 0.35
USE1-207ENST00000596136 THUMPD2Q9BTF0 503 aaKnown RBP17.22■□□□□ 0.35
USE1-207ENST00000596136 MIS18AQ9NYP9 233 aa17.22■□□□□ 0.35
USE1-207ENST00000596136 PRAMEF22A3QJZ6 481 aa17.21■□□□□ 0.35
USE1-207ENST00000596136 POLRMTO00411 1230 aaKnown RBP17.21■□□□□ 0.35
USE1-207ENST00000596136 YBX3P16989 372 aaKnown RBP eCLIP17.21■□□□□ 0.355e-7■■□□□ 12.5
USE1-207ENST00000596136 YY1P25490 414 aa17.21■□□□□ 0.35
USE1-207ENST00000596136 TGFB2P61812 414 aa17.21■□□□□ 0.35
USE1-207ENST00000596136 BABAM1Q9NWV8 329 aa17.21■□□□□ 0.35
USE1-207ENST00000596136 KIAA1551Q9HCM1 1747 aa17.21■□□□□ 0.35
USE1-207ENST00000596136 GRIN3BO60391 1043 aa17.2■□□□□ 0.34
USE1-207ENST00000596136 LMOD3Q0VAK6 560 aa17.2■□□□□ 0.34
USE1-207ENST00000596136 EIF4A1P60842 406 aaKnown RBP17.19■□□□□ 0.34
USE1-207ENST00000596136 NFIXQ14938 502 aa17.19■□□□□ 0.34
USE1-207ENST00000596136 PXDNLA1KZ92 1463 aa17.18■□□□□ 0.34
USE1-207ENST00000596136 GIGYF1O75420 1035 aaPredicted RBP17.18■□□□□ 0.34
USE1-207ENST00000596136 CCDC146Q8IYE0 955 aa17.18■□□□□ 0.34
USE1-207ENST00000596136 NBPF26B4DH59 902 aa17.17■□□□□ 0.34
USE1-207ENST00000596136 NBPF10Q6P3W6 841 aaKnown RBP17.17■□□□□ 0.34
USE1-207ENST00000596136 NBPF15Q8N660 670 aa17.17■□□□□ 0.34
USE1-207ENST00000596136 NRXN2Q9P2S2 1712 aa17.17■□□□□ 0.34
USE1-207ENST00000596136 TRIM35Q9UPQ4 493 aa17.17■□□□□ 0.34
USE1-207ENST00000596136 PELP1Q8IZL8 1130 aaKnown RBP17.16■□□□□ 0.34
USE1-207ENST00000596136 TBC1D2BQ9UPU7 963 aa17.16■□□□□ 0.34
USE1-207ENST00000596136 AFDNP55196 1824 aaKnown RBP17.16■□□□□ 0.34
USE1-207ENST00000596136 SCN7AQ01118 1682 aa17.16■□□□□ 0.34
USE1-207ENST00000596136 LAMB4A4D0S4 1761 aa17.15■□□□□ 0.34
USE1-207ENST00000596136 N4BP2Q86UW6 1770 aaPredicted RBP17.15■□□□□ 0.34
USE1-207ENST00000596136 RGL2O15211 777 aa17.15■□□□□ 0.34
USE1-207ENST00000596136 CAMTA2O94983 1202 aa17.15■□□□□ 0.34
USE1-207ENST00000596136 KCNA3P22001 575 aa17.15■□□□□ 0.34
USE1-207ENST00000596136 RRP7AQ9Y3A4 280 aaKnown RBP17.15■□□□□ 0.34
USE1-207ENST00000596136 BRCA1P38398 1863 aaKnown RBP17.14■□□□□ 0.33
USE1-207ENST00000596136 A0A0G2JLW4 131 aa17.14■□□□□ 0.33
USE1-207ENST00000596136 DPEP1P16444 411 aa17.14■□□□□ 0.33
USE1-207ENST00000596136 CLEC4GQ6UXB4 293 aa17.14■□□□□ 0.33
USE1-207ENST00000596136 NPM2Q86SE8 214 aaKnown RBP17.14■□□□□ 0.33
USE1-207ENST00000596136 TSPYL4Q9UJ04 414 aa17.14■□□□□ 0.33
USE1-207ENST00000596136 BCORQ6W2J9 1755 aa17.13■□□□□ 0.33
USE1-207ENST00000596136 CHL1O00533 1208 aa17.13■□□□□ 0.33
USE1-207ENST00000596136 SERPINB2P05120 415 aa17.13■□□□□ 0.33
USE1-207ENST00000596136 PIP4K2AP48426 406 aaPredicted RBP17.13■□□□□ 0.33
USE1-207ENST00000596136 NEUROD2Q15784 382 aa17.13■□□□□ 0.33
USE1-207ENST00000596136 CCDC184Q52MB2 194 aa17.13■□□□□ 0.33
USE1-207ENST00000596136 TBC1D9BQ66K14 1250 aa17.13■□□□□ 0.33
USE1-207ENST00000596136 DZIP3Q86Y13 1208 aaKnown RBP17.13■□□□□ 0.33
USE1-207ENST00000596136 ZNF330Q9Y3S2 320 aaPredicted RBP17.13■□□□□ 0.33
USE1-207ENST00000596136 ERBB4Q15303 1308 aa17.11■□□□□ 0.33
USE1-207ENST00000596136 APAF1O14727 1248 aa17.1■□□□□ 0.33
USE1-207ENST00000596136 ANP32CO43423 234 aa17.1■□□□□ 0.33
USE1-207ENST00000596136 BICDL1Q6ZP65 573 aa17.09■□□□□ 0.33
USE1-207ENST00000596136 ZNF784Q8NCA9 323 aaPredicted RBP17.09■□□□□ 0.33
USE1-207ENST00000596136 SETDB2Q96T68 719 aa17.09■□□□□ 0.33
USE1-207ENST00000596136 PIM2Q9P1W9 311 aa17.09■□□□□ 0.33
USE1-207ENST00000596136 CARMIL3Q8ND23 1372 aa17.09■□□□□ 0.33
USE1-207ENST00000596136 CFAP44Q96MT7 982 aa17.08■□□□□ 0.32
USE1-207ENST00000596136 ZNF652Q9Y2D9 606 aa17.08■□□□□ 0.32
USE1-207ENST00000596136 ARFGEF1Q9Y6D6 1849 aa17.07■□□□□ 0.32
USE1-207ENST00000596136 ERVV-1B6SEH8 477 aa17.07■□□□□ 0.32
USE1-207ENST00000596136 ZNF853P0CG23 659 aa17.07■□□□□ 0.32
USE1-207ENST00000596136 PRR5LQ6MZQ0 368 aa17.07■□□□□ 0.32
USE1-207ENST00000596136 LRP10Q7Z4F1 713 aa17.07■□□□□ 0.32
USE1-207ENST00000596136 WWC3Q9ULE0 1092 aa17.07■□□□□ 0.32
USE1-207ENST00000596136 BCS1LQ9Y276 419 aa17.07■□□□□ 0.32
USE1-207ENST00000596136 CHRNA5P30532 468 aa17.06■□□□□ 0.32
USE1-207ENST00000596136 PDIA6Q15084 440 aa17.06■□□□□ 0.32
USE1-207ENST00000596136 BRIP1Q9BX63 1249 aa17.06■□□□□ 0.32
USE1-207ENST00000596136 PDZRN3Q9UPQ7 1066 aa17.06■□□□□ 0.32
USE1-207ENST00000596136 ANKRD31Q8N7Z5 1873 aa17.05■□□□□ 0.32
USE1-207ENST00000596136 DLEC1Q9Y238 1755 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms