RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 MAPK8IP3Q9UPT6 1336 aa20.24■□□□□ 0.83
TRIM28-203ENST00000593582 SIPA1L3O60292 1781 aaPredicted RBP20.23■□□□□ 0.83
TRIM28-203ENST00000593582 C4AP0C0L4 1744 aa20.22■□□□□ 0.83
TRIM28-203ENST00000593582 GRIN3BO60391 1043 aa20.22■□□□□ 0.83
TRIM28-203ENST00000593582 CANXP27824 592 aaKnown RBP20.22■□□□□ 0.83
TRIM28-203ENST00000593582 COL15A1P39059 1388 aa20.21■□□□□ 0.83
TRIM28-203ENST00000593582 KCNQ3O43525 872 aa20.21■□□□□ 0.83
TRIM28-203ENST00000593582 YBX3P16989 372 aaKnown RBP eCLIP20.21■□□□□ 0.836e-20■□□□□ 9.2
TRIM28-203ENST00000593582 FKBP8Q14318 412 aa20.21■□□□□ 0.83
TRIM28-203ENST00000593582 NFE2L2Q16236 605 aa20.21■□□□□ 0.83
TRIM28-203ENST00000593582 TAF7Q15545 349 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-203ENST00000593582 USPL1Q5W0Q7 1092 aa20.2■□□□□ 0.82
TRIM28-203ENST00000593582 NARFQ9UHQ1 456 aa20.2■□□□□ 0.82
TRIM28-203ENST00000593582 A0A087WZG4 1122 aa20.18■□□□□ 0.82
TRIM28-203ENST00000593582 TGFB2P61812 414 aa20.18■□□□□ 0.82
TRIM28-203ENST00000593582 SNRPA1P09661 255 aaKnown RBP20.17■□□□□ 0.82
TRIM28-203ENST00000593582 EIF5P55010 431 aaKnown RBP20.17■□□□□ 0.82
TRIM28-203ENST00000593582 NPM2Q86SE8 214 aaKnown RBP20.17■□□□□ 0.82
TRIM28-203ENST00000593582 PRKRIP1Q9H875 184 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-203ENST00000593582 C10orf71Q711Q0 1435 aa20.17■□□□□ 0.82
TRIM28-203ENST00000593582 IL6STP40189 918 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-203ENST00000593582 ZNF330Q9Y3S2 320 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-203ENST00000593582 TM4SF1P30408 202 aa20.15■□□□□ 0.82
TRIM28-203ENST00000593582 DDR1Q08345 913 aa20.15■□□□□ 0.82
TRIM28-203ENST00000593582 WDR43Q15061 677 aaKnown RBP eCLIP20.15■□□□□ 0.82
TRIM28-203ENST00000593582 PNISRQ8TF01 805 aaKnown RBP20.15■□□□□ 0.82
TRIM28-203ENST00000593582 MIS18AQ9NYP9 233 aa20.15■□□□□ 0.82
TRIM28-203ENST00000593582 WWC3Q9ULE0 1092 aa20.15■□□□□ 0.82
TRIM28-203ENST00000593582 POLRMTO00411 1230 aaKnown RBP20.14■□□□□ 0.81
TRIM28-203ENST00000593582 A1BGP04217 495 aa20.14■□□□□ 0.81
TRIM28-203ENST00000593582 USP16Q9Y5T5 823 aa20.14■□□□□ 0.81
TRIM28-203ENST00000593582 PXDNLA1KZ92 1463 aa20.13■□□□□ 0.81
TRIM28-203ENST00000593582 THUMPD2Q9BTF0 503 aaKnown RBP20.13■□□□□ 0.81
TRIM28-203ENST00000593582 CHD4Q14839 1912 aa20.13■□□□□ 0.81
TRIM28-203ENST00000593582 A0A0G2JLW4 131 aa20.12■□□□□ 0.81
TRIM28-203ENST00000593582 RIPK4P57078 832 aa20.12■□□□□ 0.81
TRIM28-203ENST00000593582 NFIXQ14938 502 aa20.12■□□□□ 0.81
TRIM28-203ENST00000593582 BCL2L12Q9HB09 334 aa20.12■□□□□ 0.81
TRIM28-203ENST00000593582 KIF13BQ9NQT8 1826 aa20.11■□□□□ 0.81
TRIM28-203ENST00000593582 PRAMEF22A3QJZ6 481 aa20.11■□□□□ 0.81
TRIM28-203ENST00000593582 ZNF784Q8NCA9 323 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-203ENST00000593582 TBC1D2BQ9UPU7 963 aa20.11■□□□□ 0.81
TRIM28-203ENST00000593582 DLG5Q8TDM6 1919 aa20.1■□□□□ 0.81
TRIM28-203ENST00000593582 DPEP1P16444 411 aa20.1■□□□□ 0.81
TRIM28-203ENST00000593582 TMPOP42166 694 aaKnown RBP20.1■□□□□ 0.81
TRIM28-203ENST00000593582 LMOD3Q0VAK6 560 aa20.1■□□□□ 0.81
TRIM28-203ENST00000593582 CCDC146Q8IYE0 955 aa20.1■□□□□ 0.81
TRIM28-203ENST00000593582 PIP4K2AP48426 406 aaPredicted RBP20.08■□□□□ 0.81
TRIM28-203ENST00000593582 BICDL1Q6ZP65 573 aa20.08■□□□□ 0.81
TRIM28-203ENST00000593582 RUNDC1Q96C34 613 aa20.08■□□□□ 0.81
TRIM28-203ENST00000593582 ADAMTS8Q9UP79 889 aa20.08■□□□□ 0.81
TRIM28-203ENST00000593582 BCS1LQ9Y276 419 aa20.08■□□□□ 0.81
TRIM28-203ENST00000593582 SERPINB2P05120 415 aa20.07■□□□□ 0.8
TRIM28-203ENST00000593582 EIF4A1P60842 406 aaKnown RBP20.07■□□□□ 0.8
TRIM28-203ENST00000593582 DZIP3Q86Y13 1208 aaKnown RBP20.07■□□□□ 0.8
TRIM28-203ENST00000593582 GIGYF1O75420 1035 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-203ENST00000593582 NEUROD2Q15784 382 aa20.06■□□□□ 0.8
TRIM28-203ENST00000593582 TBC1D9BQ66K14 1250 aa20.06■□□□□ 0.8
TRIM28-203ENST00000593582 PIM2Q9P1W9 311 aa20.06■□□□□ 0.8
TRIM28-203ENST00000593582 TSPYL4Q9UJ04 414 aa20.06■□□□□ 0.8
TRIM28-203ENST00000593582 RRP7AQ9Y3A4 280 aaKnown RBP20.06■□□□□ 0.8
TRIM28-203ENST00000593582 N4BP2Q86UW6 1770 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-203ENST00000593582 KIAA1551Q9HCM1 1747 aa20.05■□□□□ 0.8
TRIM28-203ENST00000593582 ZNF316A6NFI3 1004 aaPredicted RBP20.05■□□□□ 0.8
TRIM28-203ENST00000593582 CAMTA2O94983 1202 aa20.05■□□□□ 0.8
TRIM28-203ENST00000593582 KCNA3P22001 575 aa20.05■□□□□ 0.8
TRIM28-203ENST00000593582 NBPF26B4DH59 902 aa20.04■□□□□ 0.8
TRIM28-203ENST00000593582 NBPF10Q6P3W6 841 aaKnown RBP20.04■□□□□ 0.8
TRIM28-203ENST00000593582 NBPF15Q8N660 670 aa20.04■□□□□ 0.8
TRIM28-203ENST00000593582 SETDB2Q96T68 719 aa20.04■□□□□ 0.8
TRIM28-203ENST00000593582 BABAM1Q9NWV8 329 aa20.04■□□□□ 0.8
TRIM28-203ENST00000593582 CARMIL3Q8ND23 1372 aa20.04■□□□□ 0.8
TRIM28-203ENST00000593582 CHRNA5P30532 468 aa20.03■□□□□ 0.8
TRIM28-203ENST00000593582 DALRD3Q5D0E6 543 aaKnown RBP20.03■□□□□ 0.8
TRIM28-203ENST00000593582 ZNF652Q9Y2D9 606 aa20.03■□□□□ 0.8
TRIM28-203ENST00000593582 SCN7AQ01118 1682 aa20.03■□□□□ 0.8
TRIM28-203ENST00000593582 KDM3BQ7LBC6 1761 aa20.03■□□□□ 0.8
TRIM28-203ENST00000593582 CLEC4GQ6UXB4 293 aa20.02■□□□□ 0.8
TRIM28-203ENST00000593582 NRXN2Q9P2S2 1712 aa20■□□□□ 0.79
TRIM28-203ENST00000593582 NPHP1O15259 732 aa20■□□□□ 0.79
TRIM28-203ENST00000593582 ARHGAP27Q6ZUM4 889 aa20■□□□□ 0.79
TRIM28-203ENST00000593582 AFDNP55196 1824 aaKnown RBP19.99■□□□□ 0.79
TRIM28-203ENST00000593582 RGL2O15211 777 aa19.99■□□□□ 0.79
TRIM28-203ENST00000593582 CNBD1Q8NA66 436 aa19.99■□□□□ 0.79
TRIM28-203ENST00000593582 TRIM35Q9UPQ4 493 aa19.99■□□□□ 0.79
TRIM28-203ENST00000593582 LAMB4A4D0S4 1761 aa19.98■□□□□ 0.79
TRIM28-203ENST00000593582 H0YIN7 160 aa19.98■□□□□ 0.79
TRIM28-203ENST00000593582 PRR5LQ6MZQ0 368 aa19.98■□□□□ 0.79
TRIM28-203ENST00000593582 C2CD5Q86YS7 1000 aa19.98■□□□□ 0.79
TRIM28-203ENST00000593582 BRIP1Q9BX63 1249 aa19.98■□□□□ 0.79
TRIM28-203ENST00000593582 PDE6BP35913 854 aa19.97■□□□□ 0.79
TRIM28-203ENST00000593582 NGEFQ8N5V2 710 aa19.97■□□□□ 0.79
TRIM28-203ENST00000593582 PDZRN3Q9UPQ7 1066 aa19.97■□□□□ 0.79
TRIM28-203ENST00000593582 LAS1LQ9Y4W2 734 aaKnown RBP19.97■□□□□ 0.79
TRIM28-203ENST00000593582 BRCA1P38398 1863 aaKnown RBP19.96■□□□□ 0.79
TRIM28-203ENST00000593582 BCORQ6W2J9 1755 aa19.96■□□□□ 0.79
TRIM28-203ENST00000593582 CHL1O00533 1208 aa19.96■□□□□ 0.79
TRIM28-203ENST00000593582 MYL6BP14649 208 aa19.96■□□□□ 0.79
TRIM28-203ENST00000593582 ST5P78524 1137 aa19.96■□□□□ 0.79
TRIM28-203ENST00000593582 KIF6Q6ZMV9 814 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms