RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 ANKLE2Q86XL3 938 aa20.27■□□□□ 0.84
SMARCA4-215ENST00000590574 EVI5LQ96CN4 794 aa20.27■□□□□ 0.84
SMARCA4-215ENST00000590574 CFAP45Q9UL16 551 aa20.27■□□□□ 0.84
SMARCA4-215ENST00000590574 PDIA4P13667 645 aaKnown RBP20.27■□□□□ 0.84
SMARCA4-215ENST00000590574 CCDC158Q5M9N0 1113 aa20.27■□□□□ 0.84
SMARCA4-215ENST00000590574 G2E3Q7L622 706 aa20.27■□□□□ 0.84
SMARCA4-215ENST00000590574 RBM33Q96EV2 1170 aaKnown RBP20.27■□□□□ 0.84
SMARCA4-215ENST00000590574 AMOTQ4VCS5 1084 aa20.27■□□□□ 0.83
SMARCA4-215ENST00000590574 MYD88Q99836 296 aa20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 DHX16O60231 1041 aaKnown RBP20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 ZC3H6P61129 1189 aaKnown RBP20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 SAFBQ15424 915 aaKnown RBP eCLIP20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 CHPF2Q9P2E5 772 aa20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 ERICH2A1L162 156 aa20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 LARP1Q6PKG0 1096 aaKnown RBP20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 USP48Q86UV5 1035 aa20.26■□□□□ 0.83
SMARCA4-215ENST00000590574 CLTCL1P53675 1640 aa20.25■□□□□ 0.83
SMARCA4-215ENST00000590574 ZCCHC11Q5TAX3 1644 aaKnown RBP20.25■□□□□ 0.83
SMARCA4-215ENST00000590574 OLFM4Q6UX06 510 aa20.25■□□□□ 0.83
SMARCA4-215ENST00000590574 ADCY5O95622 1261 aa20.25■□□□□ 0.83
SMARCA4-215ENST00000590574 ZSCAN22P10073 491 aaPredicted RBP20.25■□□□□ 0.83
SMARCA4-215ENST00000590574 CNPY2Q9Y2B0 182 aa20.25■□□□□ 0.83
SMARCA4-215ENST00000590574 FKBP4Q02790 459 aaKnown RBP eCLIP20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 ZFYVE16Q7Z3T8 1539 aa20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 KIF1BO60333 1816 aa20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 ABCC4O15439 1325 aa20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 MCM5P33992 734 aa20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 UBE2HP62256 183 aa20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 TPM1P09493 284 aa20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 HYPKQ9NX55 129 aa20.24■□□□□ 0.83
SMARCA4-215ENST00000590574 SCAND2PQ9GZW5 306 aaPredicted RBP20.23■□□□□ 0.83
SMARCA4-215ENST00000590574 CHMLP26374 656 aa20.23■□□□□ 0.83
SMARCA4-215ENST00000590574 FLT4P35916 1363 aa20.23■□□□□ 0.83
SMARCA4-215ENST00000590574 CHL1O00533 1208 aa20.23■□□□□ 0.83
SMARCA4-215ENST00000590574 CKAP2LQ8IYA6 745 aa20.22■□□□□ 0.83
SMARCA4-215ENST00000590574 EYA1Q99502 592 aa20.22■□□□□ 0.83
SMARCA4-215ENST00000590574 TET3O43151 1660 aa20.22■□□□□ 0.83
SMARCA4-215ENST00000590574 GSPT1P15170 499 aaKnown RBP20.22■□□□□ 0.83
SMARCA4-215ENST00000590574 MNS1Q8NEH6 495 aa20.22■□□□□ 0.83
SMARCA4-215ENST00000590574 HCLS1P14317 486 aaPredicted RBP20.22■□□□□ 0.83
SMARCA4-215ENST00000590574 CDC42BPBQ9Y5S2 1711 aa20.21■□□□□ 0.83
SMARCA4-215ENST00000590574 MADDQ8WXG6 1647 aa20.21■□□□□ 0.83
SMARCA4-215ENST00000590574 PDILTQ8N807 584 aa20.21■□□□□ 0.83
SMARCA4-215ENST00000590574 ANTXR1Q9H6X2 564 aa20.21■□□□□ 0.83
SMARCA4-215ENST00000590574 TBC1D2BQ9UPU7 963 aa20.21■□□□□ 0.83
SMARCA4-215ENST00000590574 KIF6Q6ZMV9 814 aa20.21■□□□□ 0.83
SMARCA4-215ENST00000590574 CCDC112Q8NEF3 446 aa20.2■□□□□ 0.82
SMARCA4-215ENST00000590574 NECAB1Q8N987 351 aa20.2■□□□□ 0.82
SMARCA4-215ENST00000590574 GIMAP6Q6P9H5 292 aa20.2■□□□□ 0.82
SMARCA4-215ENST00000590574 USP19O94966 1318 aa20.2■□□□□ 0.82
SMARCA4-215ENST00000590574 MAP3K19Q56UN5 1328 aa20.2■□□□□ 0.82
SMARCA4-215ENST00000590574 TFIP11Q9UBB9 837 aaKnown RBP20.2■□□□□ 0.82
SMARCA4-215ENST00000590574 UVSSAQ2YD98 709 aa20.19■□□□□ 0.82
SMARCA4-215ENST00000590574 MAP3K4Q9Y6R4 1608 aa20.19■□□□□ 0.82
SMARCA4-215ENST00000590574 CHD1O14646 1710 aa20.19■□□□□ 0.82
SMARCA4-215ENST00000590574 CCDC57Q2TAC2 916 aa20.19■□□□□ 0.82
SMARCA4-215ENST00000590574 GOLGA6L1Q8N7Z2 621 aa20.19■□□□□ 0.82
SMARCA4-215ENST00000590574 TSR1Q2NL82 804 aaKnown RBP20.18■□□□□ 0.82
SMARCA4-215ENST00000590574 FILIP1Q7Z7B0 1213 aa20.18■□□□□ 0.82
SMARCA4-215ENST00000590574 CNNM1Q9NRU3 951 aa20.18■□□□□ 0.82
SMARCA4-215ENST00000590574 CEP57L1Q8IYX8 460 aa20.18■□□□□ 0.82
SMARCA4-215ENST00000590574 VPS37DQ86XT2 251 aa20.18■□□□□ 0.82
SMARCA4-215ENST00000590574 ZNF830Q96NB3 372 aaPredicted RBP20.18■□□□□ 0.82
SMARCA4-215ENST00000590574 ERCC6L2Q5T890 1561 aa20.18■□□□□ 0.82
SMARCA4-215ENST00000590574 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.18■□□□□ 0.827e-8■■□□□ 12
SMARCA4-215ENST00000590574 ATP2B1P20020 1258 aa20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 RBSNQ9H1K0 784 aa20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 PDCL3Q9H2J4 239 aa20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 PHAXQ9H814 394 aaKnown RBP20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 CEP126Q9P2H0 1117 aa20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 INTS4Q96HW7 963 aaKnown RBP20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 SOS1Q07889 1333 aaPredicted RBP20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 AK2P54819 239 aa20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 ARGLU1Q9NWB6 273 aaPredicted RBP20.17■□□□□ 0.82
SMARCA4-215ENST00000590574 ZKSCAN5Q9Y2L8 839 aa20.16■□□□□ 0.82
SMARCA4-215ENST00000590574 F13A1P00488 732 aa20.16■□□□□ 0.82
SMARCA4-215ENST00000590574 RRP12Q5JTH9 1297 aaKnown RBP20.16■□□□□ 0.82
SMARCA4-215ENST00000590574 CCDC85AQ96PX6 553 aaPredicted RBP20.16■□□□□ 0.82
SMARCA4-215ENST00000590574 MAP3K5Q99683 1374 aa20.16■□□□□ 0.82
SMARCA4-215ENST00000590574 TOM1L2Q6ZVM7 507 aa20.16■□□□□ 0.82
SMARCA4-215ENST00000590574 CTNNA3Q9UI47 895 aa20.16■□□□□ 0.82
SMARCA4-215ENST00000590574 SPHKAPQ2M3C7 1700 aa20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 KIF24Q5T7B8 1368 aa20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 PA2G4Q9UQ80 394 aaKnown RBP20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 U3KPZ7 1027 aaPredicted RBP20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 TCEANC2Q96MN5 208 aa20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 STRN4Q9NRL3 753 aa20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 RBM8AQ9Y5S9 174 aaKnown RBP20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 FAM177BA6PVY3 158 aa20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 ANKRD20A12PQ8NF67 263 aa20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 LAMC1P11047 1609 aa20.15■□□□□ 0.82
SMARCA4-215ENST00000590574 SERPINC1P01008 464 aa20.14■□□□□ 0.82
SMARCA4-215ENST00000590574 GUCY1B3Q02153 619 aa20.14■□□□□ 0.81
SMARCA4-215ENST00000590574 SART3Q15020 963 aaKnown RBP20.14■□□□□ 0.81
SMARCA4-215ENST00000590574 JMYQ8N9B5 988 aa20.14■□□□□ 0.81
SMARCA4-215ENST00000590574 DNM1Q05193 864 aaKnown RBP20.14■□□□□ 0.81
SMARCA4-215ENST00000590574 JARID2Q92833 1246 aaPredicted RBP20.14■□□□□ 0.81
SMARCA4-215ENST00000590574 CLASP1Q7Z460 1538 aa20.14■□□□□ 0.81
SMARCA4-215ENST00000590574 DDX19AQ9NUU7 478 aaKnown RBP20.13■□□□□ 0.81
SMARCA4-215ENST00000590574 PKNOX2Q96KN3 472 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms