RNA–Protein interactions for RNA: ENST00000589949.1

H3F3B-209, Transcript of H3 histone family member 3B, humanhuman

TSL 2

Gene H3F3B, Length 842 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3B-209ENST00000589949 SIPA1L3O60292 1781 aaPredicted RBP24.21■■□□□ 1.47
H3F3B-209ENST00000589949 BRCA1P38398 1863 aaKnown RBP24.21■■□□□ 1.47
H3F3B-209ENST00000589949 COL15A1P39059 1388 aa24.2■■□□□ 1.46
H3F3B-209ENST00000589949 ZNF526Q8TF50 670 aaPredicted RBP24.2■■□□□ 1.46
H3F3B-209ENST00000589949 CEMIPQ8WUJ3 1361 aa24.19■■□□□ 1.46
H3F3B-209ENST00000589949 SENP3-EIF4A1A0A087X0R7 540 aa24.19■■□□□ 1.46
H3F3B-209ENST00000589949 ZPR1O75312 459 aa24.19■■□□□ 1.46
H3F3B-209ENST00000589949 ZNF790Q6PG37 636 aa24.19■■□□□ 1.46
H3F3B-209ENST00000589949 NARFQ9UHQ1 456 aa24.19■■□□□ 1.46
H3F3B-209ENST00000589949 KCNQ3O43525 872 aa24.18■■□□□ 1.46
H3F3B-209ENST00000589949 CANXP27824 592 aaKnown RBP24.18■■□□□ 1.46
H3F3B-209ENST00000589949 TEFQ10587 303 aa24.18■■□□□ 1.46
H3F3B-209ENST00000589949 NFIXQ14938 502 aa24.18■■□□□ 1.46
H3F3B-209ENST00000589949 CFAP53Q96M91 514 aa24.18■■□□□ 1.46
H3F3B-209ENST00000589949 CHRNA5P30532 468 aa24.17■■□□□ 1.46
H3F3B-209ENST00000589949 HEG1Q9ULI3 1381 aa24.16■■□□□ 1.46
H3F3B-209ENST00000589949 FCHSD2O94868 740 aa24.16■■□□□ 1.46
H3F3B-209ENST00000589949 TTC5Q8N0Z6 440 aa24.16■■□□□ 1.46
H3F3B-209ENST00000589949 GPBP1L1Q9HC44 474 aaPredicted RBP24.16■■□□□ 1.46
H3F3B-209ENST00000589949 U2AF1L5P0DN76 240 aaPredicted RBP24.15■■□□□ 1.46
H3F3B-209ENST00000589949 EIF5P55010 431 aaKnown RBP24.15■■□□□ 1.46
H3F3B-209ENST00000589949 U2AF1Q01081 240 aaKnown RBP eCLIP24.15■■□□□ 1.46
H3F3B-209ENST00000589949 ARHGAP27Q6ZUM4 889 aa24.15■■□□□ 1.46
H3F3B-209ENST00000589949 AFDNP55196 1824 aaKnown RBP24.13■■□□□ 1.45
H3F3B-209ENST00000589949 NUDCQ9Y266 331 aa24.13■■□□□ 1.45
H3F3B-209ENST00000589949 STARD3NLO95772 234 aa24.12■■□□□ 1.45
H3F3B-209ENST00000589949 PIM2Q9P1W9 311 aa24.12■■□□□ 1.45
H3F3B-209ENST00000589949 NRXN2Q9P2S2 1712 aa24.11■■□□□ 1.45
H3F3B-209ENST00000589949 MCM10Q7L590 875 aa24.11■■□□□ 1.45
H3F3B-209ENST00000589949 A1BGP04217 495 aa24.1■■□□□ 1.45
H3F3B-209ENST00000589949 DCTN1Q14203 1278 aa24.1■■□□□ 1.45
H3F3B-209ENST00000589949 CEP350Q5VT06 3117 aa24.1■■□□□ 1.45
H3F3B-209ENST00000589949 ARFGEF1Q9Y6D6 1849 aa24.1■■□□□ 1.45
H3F3B-209ENST00000589949 CARMIL3Q8ND23 1372 aa24.09■■□□□ 1.45
H3F3B-209ENST00000589949 PRAMEF22A3QJZ6 481 aa24.09■■□□□ 1.45
H3F3B-209ENST00000589949 BTBD11A6QL63 1104 aa24.09■■□□□ 1.45
H3F3B-209ENST00000589949 SERPINB2P05120 415 aa24.09■■□□□ 1.45
H3F3B-209ENST00000589949 DALRD3Q5D0E6 543 aaKnown RBP24.09■■□□□ 1.45
H3F3B-209ENST00000589949 FMNL2Q96PY5 1086 aa24.09■■□□□ 1.45
H3F3B-209ENST00000589949 KIF3CO14782 793 aa24.08■■□□□ 1.45
H3F3B-209ENST00000589949 BICDL1Q6ZP65 573 aa24.08■■□□□ 1.45
H3F3B-209ENST00000589949 TBC1D2BQ9UPU7 963 aa24.08■■□□□ 1.45
H3F3B-209ENST00000589949 TBC1D9BQ66K14 1250 aa24.07■■□□□ 1.44
H3F3B-209ENST00000589949 TEX13AQ9BXU3 409 aaPredicted RBP24.07■■□□□ 1.44
H3F3B-209ENST00000589949 USP16Q9Y5T5 823 aa24.07■■□□□ 1.44
H3F3B-209ENST00000589949 PIP4K2AP48426 406 aaPredicted RBP24.06■■□□□ 1.44
H3F3B-209ENST00000589949 ZNF330Q9Y3S2 320 aaPredicted RBP24.06■■□□□ 1.44
H3F3B-209ENST00000589949 IL6STP40189 918 aaPredicted RBP24.05■■□□□ 1.44
H3F3B-209ENST00000589949 C9orf131Q5VYM1 1079 aa24.04■■□□□ 1.44
H3F3B-209ENST00000589949 SCN7AQ01118 1682 aa24.04■■□□□ 1.44
H3F3B-209ENST00000589949 A0A087WZG4 1122 aa24.03■■□□□ 1.44
H3F3B-209ENST00000589949 CAMTA2O94983 1202 aa24.02■■□□□ 1.44
H3F3B-209ENST00000589949 CCDC24Q8N4L8 307 aa24.02■■□□□ 1.44
H3F3B-209ENST00000589949 RTF1Q92541 710 aaKnown RBP24.02■■□□□ 1.44
H3F3B-209ENST00000589949 PLEKHF1Q96S99 279 aa24.01■■□□□ 1.43
H3F3B-209ENST00000589949 MIS18AQ9NYP9 233 aa24.01■■□□□ 1.43
H3F3B-209ENST00000589949 NMRK2Q9NPI5 230 aa24■■□□□ 1.43
H3F3B-209ENST00000589949 DLEC1Q9Y238 1755 aa23.99■■□□□ 1.43
H3F3B-209ENST00000589949 ANKRD31Q8N7Z5 1873 aa23.99■■□□□ 1.43
H3F3B-209ENST00000589949 HTATSF1O43719 755 aaKnown RBP23.99■■□□□ 1.43
H3F3B-209ENST00000589949 PRELPP51888 382 aa23.99■■□□□ 1.43
H3F3B-209ENST00000589949 C2CD5Q86YS7 1000 aa23.99■■□□□ 1.43
H3F3B-209ENST00000589949 NBPF26B4DH59 902 aa23.98■■□□□ 1.43
H3F3B-209ENST00000589949 SNRPA1P09661 255 aaKnown RBP23.98■■□□□ 1.43
H3F3B-209ENST00000589949 RASSF7Q02833 373 aa23.98■■□□□ 1.43
H3F3B-209ENST00000589949 PRR5LQ6MZQ0 368 aa23.98■■□□□ 1.43
H3F3B-209ENST00000589949 NBPF10Q6P3W6 841 aaKnown RBP23.98■■□□□ 1.43
H3F3B-209ENST00000589949 NBPF15Q8N660 670 aa23.98■■□□□ 1.43
H3F3B-209ENST00000589949 SBF1O95248 1867 aa23.97■■□□□ 1.43
H3F3B-209ENST00000589949 DZIP3Q86Y13 1208 aaKnown RBP23.97■■□□□ 1.43
H3F3B-209ENST00000589949 RNF181Q9P0P0 153 aa23.97■■□□□ 1.43
H3F3B-209ENST00000589949 TAF7Q15545 349 aaPredicted RBP23.96■■□□□ 1.43
H3F3B-209ENST00000589949 BCORQ6W2J9 1755 aa23.96■■□□□ 1.43
H3F3B-209ENST00000589949 DLG5Q8TDM6 1919 aa23.95■■□□□ 1.42
H3F3B-209ENST00000589949 TTLL6Q8N841 843 aa23.95■■□□□ 1.42
H3F3B-209ENST00000589949 THUMPD2Q9BTF0 503 aaKnown RBP23.95■■□□□ 1.42
H3F3B-209ENST00000589949 H0YIN7 160 aa23.94■■□□□ 1.42
H3F3B-209ENST00000589949 HSPA6P17066 643 aa23.94■■□□□ 1.42
H3F3B-209ENST00000589949 COL11A2P13942 1736 aaPredicted RBP23.93■■□□□ 1.42
H3F3B-209ENST00000589949 BRIP1Q9BX63 1249 aa23.93■■□□□ 1.42
H3F3B-209ENST00000589949 SETDB2Q96T68 719 aa23.92■■□□□ 1.42
H3F3B-209ENST00000589949 NFKBIEO00221 500 aa23.91■■□□□ 1.42
H3F3B-209ENST00000589949 NFE2L2Q16236 605 aa23.91■■□□□ 1.42
H3F3B-209ENST00000589949 TOMM70O94826 608 aa23.89■■□□□ 1.41
H3F3B-209ENST00000589949 NPM2Q86SE8 214 aaKnown RBP23.89■■□□□ 1.41
H3F3B-209ENST00000589949 CNBD1Q8NA66 436 aa23.89■■□□□ 1.41
H3F3B-209ENST00000589949 ZNF622Q969S3 477 aaKnown RBP eCLIP23.89■■□□□ 1.414e-13■□□□□ 10.8
H3F3B-209ENST00000589949 KDM3BQ7LBC6 1761 aa23.88■■□□□ 1.41
H3F3B-209ENST00000589949 PDE6BP35913 854 aa23.88■■□□□ 1.41
H3F3B-209ENST00000589949 LMNB1P20700 586 aa23.87■■□□□ 1.41
H3F3B-209ENST00000589949 EIF4A1P60842 406 aaKnown RBP23.87■■□□□ 1.41
H3F3B-209ENST00000589949 HLFQ16534 295 aa23.87■■□□□ 1.41
H3F3B-209ENST00000589949 CLEC4GQ6UXB4 293 aa23.87■■□□□ 1.41
H3F3B-209ENST00000589949 ZNF219Q9P2Y4 722 aaPredicted RBP23.87■■□□□ 1.41
H3F3B-209ENST00000589949 C21orf2O43822 256 aa23.86■■□□□ 1.41
H3F3B-209ENST00000589949 DDX10Q13206 875 aaKnown RBP23.86■■□□□ 1.41
H3F3B-209ENST00000589949 RRAGCQ9HB90 399 aa23.86■■□□□ 1.41
H3F3B-209ENST00000589949 NEFMP07197 916 aa23.85■■□□□ 1.41
H3F3B-209ENST00000589949 SRGNP10124 158 aa23.85■■□□□ 1.41
H3F3B-209ENST00000589949 LAMB4A4D0S4 1761 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms