RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 LAS1LQ9Y4W2 734 aaKnown RBP13.51□□□□□ -0.25
VPS4B-204ENST00000589604 NEFLP07196 543 aa13.5□□□□□ -0.25
VPS4B-204ENST00000589604 CT47B1P0C2W7 299 aaPredicted RBP13.5□□□□□ -0.25
VPS4B-204ENST00000589604 ZNF790Q6PG37 636 aa13.5□□□□□ -0.25
VPS4B-204ENST00000589604 TAF1LQ8IZX4 1826 aa13.5□□□□□ -0.25
VPS4B-204ENST00000589604 LOC102724428A0A0B4J2F2 783 aa13.5□□□□□ -0.25
VPS4B-204ENST00000589604 PLIN1O60240 522 aa13.5□□□□□ -0.25
VPS4B-204ENST00000589604 SIK1P57059 783 aa13.5□□□□□ -0.25
VPS4B-204ENST00000589604 ZNF496Q96IT1 587 aaPredicted RBP13.5□□□□□ -0.25
VPS4B-204ENST00000589604 C5P01031 1676 aa13.49□□□□□ -0.25
VPS4B-204ENST00000589604 PRAMEF22A3QJZ6 481 aa13.49□□□□□ -0.25
VPS4B-204ENST00000589604 TSPYL6Q8N831 410 aa13.49□□□□□ -0.25
VPS4B-204ENST00000589604 SMARCC1Q92922 1105 aaPredicted RBP13.49□□□□□ -0.25
VPS4B-204ENST00000589604 RBM42Q9BTD8 480 aaKnown RBP13.49□□□□□ -0.25
VPS4B-204ENST00000589604 ANO8Q9HCE9 1232 aaPredicted RBP13.49□□□□□ -0.25
VPS4B-204ENST00000589604 ZNF831Q5JPB2 1677 aa13.48□□□□□ -0.25
VPS4B-204ENST00000589604 VAMP4O75379 141 aa13.48□□□□□ -0.25
VPS4B-204ENST00000589604 C8orf58Q8NAV2 365 aa13.48□□□□□ -0.25
VPS4B-204ENST00000589604 LINC00116Q8NCU8 138 aa13.48□□□□□ -0.25
VPS4B-204ENST00000589604 CCNL1Q9UK58 526 aaPredicted RBP13.48□□□□□ -0.25
VPS4B-204ENST00000589604 COL5A3P25940 1745 aaPredicted RBP13.48□□□□□ -0.25
VPS4B-204ENST00000589604 CICQ96RK0 1608 aaPredicted RBP13.48□□□□□ -0.25
VPS4B-204ENST00000589604 KRT24Q2M2I5 525 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 HEG1Q9ULI3 1381 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 ATP6V1AP38606 617 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 EIF4A1P60842 406 aaKnown RBP13.47□□□□□ -0.25
VPS4B-204ENST00000589604 ZNF827Q17R98 1081 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 C20orf194Q5TEA3 1177 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 ERICH6BQ5W0A0 696 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 SMIM5Q71RC9 77 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 AMIGO3Q86WK7 504 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 TSPYL4Q9UJ04 414 aa13.47□□□□□ -0.25
VPS4B-204ENST00000589604 TUBGCP6Q96RT7 1819 aa13.46□□□□□ -0.25
VPS4B-204ENST00000589604 C4BP0C0L5 1744 aa13.46□□□□□ -0.26
VPS4B-204ENST00000589604 SLC27A3Q5K4L6 730 aa13.46□□□□□ -0.26
VPS4B-204ENST00000589604 DNAJC10Q8IXB1 793 aa13.46□□□□□ -0.26
VPS4B-204ENST00000589604 MYH14Q7Z406 1995 aaKnown RBP13.45□□□□□ -0.26
VPS4B-204ENST00000589604 TTC5Q8N0Z6 440 aa13.45□□□□□ -0.26
VPS4B-204ENST00000589604 SSH1Q8WYL5 1049 aa13.45□□□□□ -0.26
VPS4B-204ENST00000589604 BABAM1Q9NWV8 329 aa13.45□□□□□ -0.26
VPS4B-204ENST00000589604 FMNL2Q96PY5 1086 aa13.44□□□□□ -0.26
VPS4B-204ENST00000589604 TWISTNBQ3B726 338 aaPredicted RBP13.44□□□□□ -0.26
VPS4B-204ENST00000589604 AKT1S1Q96B36 256 aa13.44□□□□□ -0.26
VPS4B-204ENST00000589604 BCL2L13Q9BXK5 485 aa13.44□□□□□ -0.26
VPS4B-204ENST00000589604 USP16Q9Y5T5 823 aa13.44□□□□□ -0.26
VPS4B-204ENST00000589604 ELL2O00472 640 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-204ENST00000589604 CYP19A1P11511 503 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-204ENST00000589604 BRPF1P55201 1214 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-204ENST00000589604 ALDH1L2Q3SY69 923 aa13.43□□□□□ -0.26
VPS4B-204ENST00000589604 ZNF428Q96B54 188 aa13.43□□□□□ -0.26
VPS4B-204ENST00000589604 CACNA1FO60840 1977 aa13.43□□□□□ -0.26
VPS4B-204ENST00000589604 GIGYF1O75420 1035 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-204ENST00000589604 INTS5Q6P9B9 1019 aaKnown RBP13.42□□□□□ -0.26
VPS4B-204ENST00000589604 HOMEZQ8IX15 550 aa13.42□□□□□ -0.26
VPS4B-204ENST00000589604 EXOC6Q8TAG9 804 aa13.42□□□□□ -0.26
VPS4B-204ENST00000589604 PDGFDQ9GZP0 370 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-204ENST00000589604 UBR3Q6ZT12 1888 aa13.42□□□□□ -0.26
VPS4B-204ENST00000589604 LAMB4A4D0S4 1761 aa13.41□□□□□ -0.26
VPS4B-204ENST00000589604 CRKLP46109 303 aaKnown RBP13.41□□□□□ -0.26
VPS4B-204ENST00000589604 TNNQ9UQP3 1299 aa13.41□□□□□ -0.26
VPS4B-204ENST00000589604 PIP4K2AP48426 406 aaPredicted RBP13.4□□□□□ -0.26
VPS4B-204ENST00000589604 SLC15A2Q16348 729 aa13.4□□□□□ -0.26
VPS4B-204ENST00000589604 MRPL50Q8N5N7 158 aaKnown RBP13.4□□□□□ -0.26
VPS4B-204ENST00000589604 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.4□□□□□ -0.26
VPS4B-204ENST00000589604 CRBNQ96SW2 442 aa13.4□□□□□ -0.26
VPS4B-204ENST00000589604 SRCAPQ6ZRS2 3230 aa13.4□□□□□ -0.26
VPS4B-204ENST00000589604 PSDA5PKW4 1024 aaPredicted RBP13.4□□□□□ -0.26
VPS4B-204ENST00000589604 A1BGP04217 495 aa13.4□□□□□ -0.26
VPS4B-204ENST00000589604 SNRPA1P09661 255 aaKnown RBP13.4□□□□□ -0.26
VPS4B-204ENST00000589604 R3HDM1Q15032 1099 aaKnown RBP13.4□□□□□ -0.26
VPS4B-204ENST00000589604 SMC4Q9NTJ3 1288 aa13.4□□□□□ -0.26
VPS4B-204ENST00000589604 CNTNAP4Q9C0A0 1308 aa13.39□□□□□ -0.27
VPS4B-204ENST00000589604 RLBP1P12271 317 aa13.39□□□□□ -0.27
VPS4B-204ENST00000589604 PDE3AQ14432 1141 aa13.39□□□□□ -0.27
VPS4B-204ENST00000589604 PPP4R2Q9NY27 417 aa13.39□□□□□ -0.27
VPS4B-204ENST00000589604 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.39□□□□□ -0.27
VPS4B-204ENST00000589604 ZBTB1Q9Y2K1 713 aa13.39□□□□□ -0.27
VPS4B-204ENST00000589604 PNPLA7Q6ZV29 1317 aa13.38□□□□□ -0.27
VPS4B-204ENST00000589604 NBPF26B4DH59 902 aa13.38□□□□□ -0.27
VPS4B-204ENST00000589604 NBPF14Q5TI25 921 aa13.38□□□□□ -0.27
VPS4B-204ENST00000589604 NBPF10Q6P3W6 841 aaKnown RBP13.38□□□□□ -0.27
VPS4B-204ENST00000589604 NBPF15Q8N660 670 aa13.38□□□□□ -0.27
VPS4B-204ENST00000589604 CCDC87Q9NVE4 849 aa13.38□□□□□ -0.27
VPS4B-204ENST00000589604 QSER1Q2KHR3 1735 aa13.38□□□□□ -0.27
VPS4B-204ENST00000589604 TCERG1O14776 1098 aaKnown RBP13.37□□□□□ -0.27
VPS4B-204ENST00000589604 GNPATO15228 680 aa13.37□□□□□ -0.27
VPS4B-204ENST00000589604 RC3H1Q5TC82 1133 aaKnown RBP13.37□□□□□ -0.27
VPS4B-204ENST00000589604 BBXQ8WY36 941 aaPredicted RBP13.37□□□□□ -0.27
VPS4B-204ENST00000589604 NECTIN2Q92692 538 aa13.37□□□□□ -0.27
VPS4B-204ENST00000589604 FRAT1Q92837 279 aaPredicted RBP13.37□□□□□ -0.27
VPS4B-204ENST00000589604 STK32BQ9NY57 414 aa13.37□□□□□ -0.27
VPS4B-204ENST00000589604 NOB1Q9ULX3 412 aaKnown RBP13.37□□□□□ -0.27
VPS4B-204ENST00000589604 CASZ1Q86V15 1759 aa13.37□□□□□ -0.27
VPS4B-204ENST00000589604 PANK1Q8TE04 598 aa13.37□□□□□ -0.27
VPS4B-204ENST00000589604 C4AP0C0L4 1744 aa13.36□□□□□ -0.27
VPS4B-204ENST00000589604 SOS1Q07889 1333 aaPredicted RBP13.36□□□□□ -0.27
VPS4B-204ENST00000589604 TRIM27P14373 513 aa13.36□□□□□ -0.27
VPS4B-204ENST00000589604 CANXP27824 592 aaKnown RBP13.36□□□□□ -0.27
VPS4B-204ENST00000589604 PDIA6Q15084 440 aa13.36□□□□□ -0.27
VPS4B-204ENST00000589604 PROSER3Q2NL68 480 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms