RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	LAMB4	A4D0S4	1761 aa		19.33	■□□□□ 0.68
DDX39A-209	ENST00000589318	ATP10D	Q9P241	1426 aa		19.33	■□□□□ 0.68
DDX39A-209	ENST00000589318	PDE4A	P27815	886 aa		19.32	■□□□□ 0.68
DDX39A-209	ENST00000589318	PROSER3	Q2NL68	480 aa		19.32	■□□□□ 0.68
DDX39A-209	ENST00000589318	SLC4A10	Q6U841	1118 aa		19.32	■□□□□ 0.68
DDX39A-209	ENST00000589318	SMC5	Q8IY18	1101 aa		19.32	■□□□□ 0.68
DDX39A-209	ENST00000589318	MEIS3	Q99687	375 aa		19.32	■□□□□ 0.68
DDX39A-209	ENST00000589318	JCAD	Q9P266	1359 aa		19.32	■□□□□ 0.68
DDX39A-209	ENST00000589318	ITGB4	P16144	1822 aa		19.31	■□□□□ 0.68
DDX39A-209	ENST00000589318	SPATA31A1	Q5TZJ5	1347 aa		19.31	■□□□□ 0.68
DDX39A-209	ENST00000589318	KCP	Q6ZWJ8	1503 aa		19.31	■□□□□ 0.68
DDX39A-209	ENST00000589318	PDZRN3	Q9UPQ7	1066 aa		19.31	■□□□□ 0.68
DDX39A-209	ENST00000589318	PDIA6	Q15084	440 aa		19.3	■□□□□ 0.68
DDX39A-209	ENST00000589318	TTC5	Q8N0Z6	440 aa		19.3	■□□□□ 0.68
DDX39A-209	ENST00000589318	FAM43A	Q8N2R8	423 aa		19.3	■□□□□ 0.68
DDX39A-209	ENST00000589318	LRP6	O75581	1613 aa		19.3	■□□□□ 0.68
DDX39A-209	ENST00000589318	TNS2	Q63HR2	1409 aa		19.3	■□□□□ 0.68
DDX39A-209	ENST00000589318	RGS3	P49796	1198 aa		19.29	■□□□□ 0.68
DDX39A-209	ENST00000589318	FMNL2	Q96PY5	1086 aa		19.29	■□□□□ 0.68
DDX39A-209	ENST00000589318	ADCY9	O60503	1353 aa		19.29	■□□□□ 0.68
DDX39A-209	ENST00000589318	DDX21	Q9NR30	783 aa	Known RBP eCLIP	19.28	■□□□□ 0.68
DDX39A-209	ENST00000589318	SNRPA1	P09661	255 aa	Known RBP	19.27	■□□□□ 0.68
DDX39A-209	ENST00000589318	USP16	Q9Y5T5	823 aa		19.27	■□□□□ 0.68
DDX39A-209	ENST00000589318	SPATA31A5	Q5VU36	1347 aa		19.27	■□□□□ 0.68
DDX39A-209	ENST00000589318	SPATA31A7	Q8IWB4	1347 aa		19.27	■□□□□ 0.68
DDX39A-209	ENST00000589318	THRAP3	Q9Y2W1	955 aa	Known RBP	19.27	■□□□□ 0.67
DDX39A-209	ENST00000589318	PI4KAP2	A4QPH2	592 aa		19.26	■□□□□ 0.67
DDX39A-209	ENST00000589318	GLIPR1L2	Q4G1C9	344 aa		19.26	■□□□□ 0.67
DDX39A-209	ENST00000589318	PI4KAP1	Q8N8J0	262 aa		19.26	■□□□□ 0.67
DDX39A-209	ENST00000589318	HYPK	Q9NX55	129 aa		19.26	■□□□□ 0.67
DDX39A-209	ENST00000589318	CEP85	Q6P2H3	762 aa		19.25	■□□□□ 0.67
DDX39A-209	ENST00000589318	LRP10	Q7Z4F1	713 aa		19.25	■□□□□ 0.67
DDX39A-209	ENST00000589318	ANKRD44	Q8N8A2	993 aa		19.25	■□□□□ 0.67
DDX39A-209	ENST00000589318	BCL9L	Q86UU0	1499 aa		19.25	■□□□□ 0.67
DDX39A-209	ENST00000589318	DNAAF4	Q8WXU2	420 aa		19.25	■□□□□ 0.67
DDX39A-209	ENST00000589318	EXOC5	O00471	708 aa		19.24	■□□□□ 0.67
DDX39A-209	ENST00000589318	CDCA7	Q9BWT1	371 aa	Predicted RBP	19.24	■□□□□ 0.67
DDX39A-209	ENST00000589318	BEND3	Q5T5X7	828 aa		19.23	■□□□□ 0.67
DDX39A-209	ENST00000589318	NPM2	Q86SE8	214 aa	Known RBP	19.23	■□□□□ 0.67
DDX39A-209	ENST00000589318	RPAP2	Q8IXW5	612 aa	Predicted RBP	19.23	■□□□□ 0.67
DDX39A-209	ENST00000589318	DOT1L	Q8TEK3	1739 aa		19.23	■□□□□ 0.67
DDX39A-209	ENST00000589318	USP44	Q9H0E7	712 aa		19.23	■□□□□ 0.67
DDX39A-209	ENST00000589318	TMOD3	Q9NYL9	352 aa		19.23	■□□□□ 0.67
DDX39A-209	ENST00000589318	BRPF3	Q9ULD4	1205 aa		19.23	■□□□□ 0.67
DDX39A-209	ENST00000589318	EIF5B	O60841	1220 aa	Known RBP	19.22	■□□□□ 0.67
DDX39A-209	ENST00000589318	NUCB1	Q02818	461 aa		19.22	■□□□□ 0.67
DDX39A-209	ENST00000589318	KSR2	Q6VAB6	950 aa		19.22	■□□□□ 0.67
DDX39A-209	ENST00000589318	PIGB	Q92521	554 aa		19.22	■□□□□ 0.67
DDX39A-209	ENST00000589318	GCC1	Q96CN9	775 aa		19.22	■□□□□ 0.67
DDX39A-209	ENST00000589318	SPATA31A6	Q5VVP1	1343 aa		19.22	■□□□□ 0.67
DDX39A-209	ENST00000589318	BARGIN	Q6ZT62	677 aa		19.21	■□□□□ 0.67
DDX39A-209	ENST00000589318	UNC5CL	Q8IV45	518 aa		19.21	■□□□□ 0.67
DDX39A-209	ENST00000589318	SRCIN1	Q9C0H9	1055 aa		19.21	■□□□□ 0.67
DDX39A-209	ENST00000589318	BCL9	O00512	1426 aa		19.21	■□□□□ 0.67
DDX39A-209	ENST00000589318	GNAI3	P08754	354 aa		19.21	■□□□□ 0.67
DDX39A-209	ENST00000589318	MAP3K2	Q9Y2U5	619 aa		19.21	■□□□□ 0.67
DDX39A-209	ENST00000589318	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	19.21	■□□□□ 0.66
DDX39A-209	ENST00000589318	GNAI2	P04899	355 aa		19.2	■□□□□ 0.66
DDX39A-209	ENST00000589318	C8orf37	Q96NL8	207 aa		19.2	■□□□□ 0.66
DDX39A-209	ENST00000589318	MYL6B	P14649	208 aa		19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	NFKBIB	Q15653	356 aa		19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	FNBP4	Q8N3X1	1017 aa	Predicted RBP	19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	DCTPP1	Q9H773	170 aa		19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	KAT6B	Q8WYB5	2073 aa		19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	PTCD1	O75127	700 aa	Known RBP	19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	DDB1	Q16531	1140 aa		19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	C8orf34	Q49A92	452 aa		19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	ASAP1	Q9ULH1	1129 aa		19.19	■□□□□ 0.66
DDX39A-209	ENST00000589318	PIP4K2A	P48426	406 aa	Predicted RBP	19.18	■□□□□ 0.66
DDX39A-209	ENST00000589318	XAGE3	Q8WTP9	111 aa		19.18	■□□□□ 0.66
DDX39A-209	ENST00000589318	NGLY1	Q96IV0	654 aa		19.18	■□□□□ 0.66
DDX39A-209	ENST00000589318	ATG3	Q9NT62	314 aa		19.18	■□□□□ 0.66
DDX39A-209	ENST00000589318	ARFGEF2	Q9Y6D5	1785 aa		19.18	■□□□□ 0.66
DDX39A-209	ENST00000589318	ERBB4	Q15303	1308 aa		19.18	■□□□□ 0.66
DDX39A-209	ENST00000589318	AIMP1	Q12904	312 aa	Known RBP	19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	VPS72	Q15906	364 aa		19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	CHD1L	Q86WJ1	897 aa		19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	NBPF26	B4DH59	902 aa		19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	HSPA1L	P34931	641 aa		19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	NBPF14	Q5TI25	921 aa		19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	NBPF10	Q6P3W6	841 aa	Known RBP	19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	COPS6	Q7L5N1	327 aa		19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	NBPF15	Q8N660	670 aa		19.17	■□□□□ 0.66
DDX39A-209	ENST00000589318	DDX58	O95786	925 aa	Known RBP	19.16	■□□□□ 0.66
DDX39A-209	ENST00000589318	FAM161A	Q3B820	660 aa		19.16	■□□□□ 0.66
DDX39A-209	ENST00000589318	MARCH10	Q8NA82	808 aa	Predicted RBP	19.16	■□□□□ 0.66
DDX39A-209	ENST00000589318	LNPK	Q9C0E8	428 aa		19.16	■□□□□ 0.66
DDX39A-209	ENST00000589318	DAXX	Q9UER7	740 aa	Predicted RBP	19.16	■□□□□ 0.66
DDX39A-209	ENST00000589318	CCDC9	Q9Y3X0	531 aa	Known RBP	19.16	■□□□□ 0.66
DDX39A-209	ENST00000589318	LRRFIP2	Q9Y608	721 aa	Known RBP	19.16	■□□□□ 0.66
DDX39A-209	ENST00000589318	ALDH1L1	O75891	902 aa		19.15	■□□□□ 0.66
DDX39A-209	ENST00000589318	UBTFL1	P0CB47	393 aa	Predicted RBP	19.15	■□□□□ 0.66
DDX39A-209	ENST00000589318	NBPF7	P0C2Y1	421 aa	Predicted RBP	19.15	■□□□□ 0.66
DDX39A-209	ENST00000589318	ANKRD45	Q5TZF3	282 aa		19.15	■□□□□ 0.66
DDX39A-209	ENST00000589318	NUP188	Q5SRE5	1749 aa		19.15	■□□□□ 0.66
DDX39A-209	ENST00000589318	IBTK	Q9P2D0	1353 aa	Predicted RBP	19.14	■□□□□ 0.66
DDX39A-209	ENST00000589318	LINS1	Q8NG48	757 aa		19.14	■□□□□ 0.65
DDX39A-209	ENST00000589318	PNMA6E	A0A0J9YXQ4	647 aa		19.13	■□□□□ 0.65
DDX39A-209	ENST00000589318	ATP8B2	P98198	1209 aa		19.13	■□□□□ 0.65
DDX39A-209	ENST00000589318	CWF19L2	Q2TBE0	894 aa	Known RBP	19.13	■□□□□ 0.65

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms