RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 KIF7Q2M1P5 1343 aa10.58□□□□□ -0.72
VMP1-204ENST00000587259 MYH14Q7Z406 1995 aaKnown RBP10.57□□□□□ -0.72
VMP1-204ENST00000587259 RPS6KA4O75676 772 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 CRKLP46109 303 aaKnown RBP10.57□□□□□ -0.72
VMP1-204ENST00000587259 TGFB2P61812 414 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 DDR1Q08345 913 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 C9orf131Q5VYM1 1079 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 NLGN1Q8N2Q7 840 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 NFATC2IPQ8NCF5 419 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 CCDC87Q9NVE4 849 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 PARP3Q9Y6F1 533 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 CNTNAP4Q9C0A0 1308 aa10.57□□□□□ -0.72
VMP1-204ENST00000587259 COL5A3P25940 1745 aaPredicted RBP10.56□□□□□ -0.72
VMP1-204ENST00000587259 ERVV-2B6SEH9 535 aa10.56□□□□□ -0.72
VMP1-204ENST00000587259 DNAJC5GQ8N7S2 189 aa10.56□□□□□ -0.72
VMP1-204ENST00000587259 DCAF5Q96JK2 942 aa10.56□□□□□ -0.72
VMP1-204ENST00000587259 PANK3Q9H999 370 aa10.56□□□□□ -0.72
VMP1-204ENST00000587259 KCPQ6ZWJ8 1503 aa10.55□□□□□ -0.72
VMP1-204ENST00000587259 HMGB2P26583 209 aaKnown RBP10.55□□□□□ -0.72
VMP1-204ENST00000587259 MTHFSP49914 203 aa10.55□□□□□ -0.72
VMP1-204ENST00000587259 PLEKHO1Q53GL0 409 aaPredicted RBP10.55□□□□□ -0.72
VMP1-204ENST00000587259 RC3H1Q5TC82 1133 aaKnown RBP10.55□□□□□ -0.72
VMP1-204ENST00000587259 TOMM70O94826 608 aa10.54□□□□□ -0.72
VMP1-204ENST00000587259 APLP1P51693 650 aa10.54□□□□□ -0.72
VMP1-204ENST00000587259 RASSF7Q02833 373 aa10.54□□□□□ -0.72
VMP1-204ENST00000587259 SLC39A6Q13433 755 aa10.54□□□□□ -0.72
VMP1-204ENST00000587259 SULT6B1Q6IMI4 303 aa10.54□□□□□ -0.72
VMP1-204ENST00000587259 INTS5Q6P9B9 1019 aaKnown RBP10.54□□□□□ -0.72
VMP1-204ENST00000587259 CREBZFQ9NS37 354 aa10.54□□□□□ -0.72
VMP1-204ENST00000587259 RNF181Q9P0P0 153 aa10.54□□□□□ -0.72
VMP1-204ENST00000587259 BRCA1P38398 1863 aaKnown RBP10.53□□□□□ -0.72
VMP1-204ENST00000587259 TJP1Q07157 1748 aa10.53□□□□□ -0.72
VMP1-204ENST00000587259 C1orf141Q5JVX7 400 aa10.53□□□□□ -0.72
VMP1-204ENST00000587259 USPL1Q5W0Q7 1092 aa10.53□□□□□ -0.72
VMP1-204ENST00000587259 DNAJC10Q8IXB1 793 aa10.53□□□□□ -0.72
VMP1-204ENST00000587259 RRAGCQ9HB90 399 aa10.53□□□□□ -0.72
VMP1-204ENST00000587259 LGR6Q9HBX8 967 aa10.53□□□□□ -0.72
VMP1-204ENST00000587259 USP42Q9H9J4 1324 aaKnown RBP10.53□□□□□ -0.72
VMP1-204ENST00000587259 POLRMTO00411 1230 aaKnown RBP10.52□□□□□ -0.73
VMP1-204ENST00000587259 HSP90AB1P08238 724 aaKnown RBP10.52□□□□□ -0.73
VMP1-204ENST00000587259 PRELPP51888 382 aa10.52□□□□□ -0.73
VMP1-204ENST00000587259 MORC1Q86VD1 984 aa10.52□□□□□ -0.73
VMP1-204ENST00000587259 PIM2Q9P1W9 311 aa10.52□□□□□ -0.73
VMP1-204ENST00000587259 ZNF831Q5JPB2 1677 aa10.51□□□□□ -0.73
VMP1-204ENST00000587259 HMOX1P09601 288 aa10.51□□□□□ -0.73
VMP1-204ENST00000587259 CD44P16070 742 aaKnown RBP10.51□□□□□ -0.73
VMP1-204ENST00000587259 DALRD3Q5D0E6 543 aaKnown RBP10.51□□□□□ -0.73
VMP1-204ENST00000587259 ADAMTS7Q9UKP4 1686 aa10.5□□□□□ -0.73
VMP1-204ENST00000587259 TM4SF1P30408 202 aa10.5□□□□□ -0.73
VMP1-204ENST00000587259 IL13P35225 146 aa10.5□□□□□ -0.73
VMP1-204ENST00000587259 CNGB1Q14028 1251 aaPredicted RBP10.5□□□□□ -0.73
VMP1-204ENST00000587259 AMOTQ4VCS5 1084 aa10.5□□□□□ -0.73
VMP1-204ENST00000587259 COL13A1Q5TAT6 717 aaPredicted RBP10.5□□□□□ -0.73
VMP1-204ENST00000587259 C16orf71Q8IYS4 520 aaPredicted RBP10.5□□□□□ -0.73
VMP1-204ENST00000587259 CCDC24Q8N4L8 307 aa10.5□□□□□ -0.73
VMP1-204ENST00000587259 WDR90Q96KV7 1748 aa10.5□□□□□ -0.73
VMP1-204ENST00000587259 GABBR2O75899 941 aa10.49□□□□□ -0.73
VMP1-204ENST00000587259 NFIXQ14938 502 aa10.49□□□□□ -0.73
VMP1-204ENST00000587259 BICDL1Q6ZP65 573 aa10.49□□□□□ -0.73
VMP1-204ENST00000587259 RBM46Q8TBY0 533 aaKnown RBP10.49□□□□□ -0.73
VMP1-204ENST00000587259 BCL2L12Q9HB09 334 aa10.49□□□□□ -0.73
VMP1-204ENST00000587259 ZBTB1Q9Y2K1 713 aa10.49□□□□□ -0.73
VMP1-204ENST00000587259 SOS1Q07889 1333 aaPredicted RBP10.49□□□□□ -0.73
VMP1-204ENST00000587259 CARMIL3Q8ND23 1372 aa10.49□□□□□ -0.73
VMP1-204ENST00000587259 ARFGEF1Q9Y6D6 1849 aa10.49□□□□□ -0.73
VMP1-204ENST00000587259 ZPR1O75312 459 aa10.48□□□□□ -0.73
VMP1-204ENST00000587259 CYP19A1P11511 503 aaPredicted RBP10.48□□□□□ -0.73
VMP1-204ENST00000587259 KLRG1Q96E93 195 aa10.48□□□□□ -0.73
VMP1-204ENST00000587259 SLC52A2Q9HAB3 445 aa10.48□□□□□ -0.73
VMP1-204ENST00000587259 RNMTO43148 476 aaKnown RBP10.47□□□□□ -0.73
VMP1-204ENST00000587259 CANXP27824 592 aaKnown RBP10.47□□□□□ -0.73
VMP1-204ENST00000587259 PLEKHG2Q9H7P9 1386 aa10.47□□□□□ -0.73
VMP1-204ENST00000587259 SCN11AQ9UI33 1791 aa10.47□□□□□ -0.73
VMP1-204ENST00000587259 SBF1O95248 1867 aa10.47□□□□□ -0.73
VMP1-204ENST00000587259 MTHFSDQ2M296 383 aaKnown RBP10.46□□□□□ -0.73
VMP1-204ENST00000587259 AKAP4Q5JQC9 854 aa10.46□□□□□ -0.73
VMP1-204ENST00000587259 PRKRIP1Q9H875 184 aaPredicted RBP10.46□□□□□ -0.73
VMP1-204ENST00000587259 KDM2BQ8NHM5 1336 aa10.46□□□□□ -0.73
VMP1-204ENST00000587259 COL15A1P39059 1388 aa10.46□□□□□ -0.74
VMP1-204ENST00000587259 AFDNP55196 1824 aaKnown RBP10.46□□□□□ -0.74
VMP1-204ENST00000587259 SERPINB2P05120 415 aa10.45□□□□□ -0.74
VMP1-204ENST00000587259 C2CD5Q86YS7 1000 aa10.45□□□□□ -0.74
VMP1-204ENST00000587259 NARFQ9UHQ1 456 aa10.45□□□□□ -0.74
VMP1-204ENST00000587259 ZNF330Q9Y3S2 320 aaPredicted RBP10.45□□□□□ -0.74
VMP1-204ENST00000587259 KNSTRNQ9Y448 316 aa10.45□□□□□ -0.74
VMP1-204ENST00000587259 PCNTO95613 3336 aa10.45□□□□□ -0.74
VMP1-204ENST00000587259 NFKBIEO00221 500 aa10.44□□□□□ -0.74
VMP1-204ENST00000587259 FSTL1Q12841 308 aa10.44□□□□□ -0.74
VMP1-204ENST00000587259 AMER1Q5JTC6 1135 aaPredicted RBP10.44□□□□□ -0.74
VMP1-204ENST00000587259 CC2D1BQ5T0F9 858 aaKnown RBP10.44□□□□□ -0.74
VMP1-204ENST00000587259 TBC1D9BQ66K14 1250 aa10.44□□□□□ -0.74
VMP1-204ENST00000587259 MRC1P22897 1456 aa10.43□□□□□ -0.74
VMP1-204ENST00000587259 POTECB2RU33 542 aa10.43□□□□□ -0.74
VMP1-204ENST00000587259 PIP4K2AP48426 406 aaPredicted RBP10.43□□□□□ -0.74
VMP1-204ENST00000587259 RALBP1Q15311 655 aa10.43□□□□□ -0.74
VMP1-204ENST00000587259 JMYQ8N9B5 988 aa10.43□□□□□ -0.74
VMP1-204ENST00000587259 YTHDC1Q96MU7 727 aaKnown RBP10.43□□□□□ -0.74
VMP1-204ENST00000587259 NRXN2Q9P2S2 1712 aa10.42□□□□□ -0.74
VMP1-204ENST00000587259 TNRC6CQ9HCJ0 1690 aaKnown RBP10.42□□□□□ -0.74
VMP1-204ENST00000587259 C21orf2O43822 256 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms