RNA–Protein interactions for RNA: ENST00000583800.1

SMCHD1-210, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-210ENST00000583800 SMG6Q86US8 1419 aaKnown RBP10.92□□□□□ -0.66
SMCHD1-210ENST00000583800 PKD1L3Q7Z443 1732 aa10.92□□□□□ -0.66
SMCHD1-210ENST00000583800 USP47Q96K76 1375 aa10.92□□□□□ -0.66
SMCHD1-210ENST00000583800 VARS2Q5ST30 1063 aaKnown RBP10.92□□□□□ -0.66
SMCHD1-210ENST00000583800 RNF25Q96BH1 459 aaPredicted RBP10.92□□□□□ -0.66
SMCHD1-210ENST00000583800 RIMBP2O15034 1052 aa10.91□□□□□ -0.66
SMCHD1-210ENST00000583800 FYB1O15117 783 aa10.91□□□□□ -0.66
SMCHD1-210ENST00000583800 ANKRD26Q9UPS8 1709 aa10.91□□□□□ -0.66
SMCHD1-210ENST00000583800 UBR3Q6ZT12 1888 aa10.91□□□□□ -0.66
SMCHD1-210ENST00000583800 GOLGB1Q14789 3259 aaKnown RBP10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 C4BP0C0L5 1744 aa10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 SENP3-EIF4A1A0A087X0R7 540 aa10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 C1QTNF8P60827 252 aa10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 MSL1Q68DK7 614 aa10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 COL23A1Q86Y22 540 aaPredicted RBP10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 RAPGEF4Q8WZA2 1011 aa10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 MAP2P11137 1827 aaKnown RBP10.9□□□□□ -0.66
SMCHD1-210ENST00000583800 INSRP06213 1382 aa10.9□□□□□ -0.67
SMCHD1-210ENST00000583800 FLT4P35916 1363 aa10.9□□□□□ -0.67
SMCHD1-210ENST00000583800 CGNL1Q0VF96 1302 aa10.89□□□□□ -0.67
SMCHD1-210ENST00000583800 TATP17735 454 aaPredicted RBP10.89□□□□□ -0.67
SMCHD1-210ENST00000583800 TMF1P82094 1093 aa10.89□□□□□ -0.67
SMCHD1-210ENST00000583800 HSP90AB2PQ58FF8 381 aa10.89□□□□□ -0.67
SMCHD1-210ENST00000583800 EFCAB3Q8N7B9 438 aa10.89□□□□□ -0.67
SMCHD1-210ENST00000583800 PALLDQ8WX93 1383 aa10.89□□□□□ -0.67
SMCHD1-210ENST00000583800 PCDH11XQ9BZA7 1347 aa10.88□□□□□ -0.67
SMCHD1-210ENST00000583800 PCDH11YQ9BZA8 1340 aa10.88□□□□□ -0.67
SMCHD1-210ENST00000583800 YBX3P16989 372 aaKnown RBP eCLIP10.88□□□□□ -0.67
SMCHD1-210ENST00000583800 NSD3Q9BZ95 1437 aa10.87□□□□□ -0.67
SMCHD1-210ENST00000583800 CYP27B1O15528 508 aa10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 GIGYF1O75420 1035 aaPredicted RBP10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 NKX1-1Q15270 411 aaPredicted RBP10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 TMEM92Q6UXU6 159 aa10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 MPRIPQ6WCQ1 1025 aa10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 ZNF687Q8N1G0 1237 aa10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 ZSWIM6Q9HCJ5 1215 aa10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 EMILIN1Q9Y6C2 1016 aa10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 KIF24Q5T7B8 1368 aa10.86□□□□□ -0.67
SMCHD1-210ENST00000583800 NCAPD2Q15021 1401 aa10.85□□□□□ -0.67
SMCHD1-210ENST00000583800 GTPBP6O43824 516 aaPredicted RBP10.84□□□□□ -0.67
SMCHD1-210ENST00000583800 AMIGO3Q86WK7 504 aa10.84□□□□□ -0.67
SMCHD1-210ENST00000583800 MICALL2Q8IY33 904 aa10.84□□□□□ -0.67
SMCHD1-210ENST00000583800 CARD14Q9BXL6 1004 aa10.84□□□□□ -0.67
SMCHD1-210ENST00000583800 RIOK3O14730 519 aaKnown RBP10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 PPM1GO15355 546 aaPredicted RBP10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 GRIN3BO60391 1043 aa10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 PHF14O94880 888 aa10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 CDCA8Q53HL2 280 aa10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 GPR153Q6NV75 609 aa10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 SMIM5Q71RC9 77 aa10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 AK7Q96M32 723 aa10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 ATP10DQ9P241 1426 aa10.83□□□□□ -0.68
SMCHD1-210ENST00000583800 FLAD1Q8NFF5 587 aa10.82□□□□□ -0.68
SMCHD1-210ENST00000583800 PIGBQ92521 554 aa10.82□□□□□ -0.68
SMCHD1-210ENST00000583800 SMARCC1Q92922 1105 aaPredicted RBP10.82□□□□□ -0.68
SMCHD1-210ENST00000583800 WWC3Q9ULE0 1092 aa10.81□□□□□ -0.68
SMCHD1-210ENST00000583800 CD2APQ9Y5K6 639 aa10.81□□□□□ -0.68
SMCHD1-210ENST00000583800 KIF13BQ9NQT8 1826 aa10.81□□□□□ -0.68
SMCHD1-210ENST00000583800 KIAA1551Q9HCM1 1747 aa10.81□□□□□ -0.68
SMCHD1-210ENST00000583800 N4BP2Q86UW6 1770 aaPredicted RBP10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 LINC00116Q8NCU8 138 aa10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 EYA1Q99502 592 aa10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 SPG7Q9UQ90 795 aa10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 COL5A3P25940 1745 aaPredicted RBP10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 WASHC2AQ641Q2 1341 aa10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 IGSF1Q8N6C5 1336 aa10.8□□□□□ -0.68
SMCHD1-210ENST00000583800 ADCY9O60503 1353 aa10.79□□□□□ -0.68
SMCHD1-210ENST00000583800 LOC102724428A0A0B4J2F2 783 aa10.79□□□□□ -0.68
SMCHD1-210ENST00000583800 HMGB2P26583 209 aaKnown RBP10.79□□□□□ -0.68
SMCHD1-210ENST00000583800 SIK1P57059 783 aa10.79□□□□□ -0.68
SMCHD1-210ENST00000583800 SSFA2P28290 1259 aa10.78□□□□□ -0.68
SMCHD1-210ENST00000583800 ITPK1Q13572 414 aa10.78□□□□□ -0.68
SMCHD1-210ENST00000583800 TMOD3Q9NYL9 352 aa10.78□□□□□ -0.68
SMCHD1-210ENST00000583800 ASAP1Q9ULH1 1129 aa10.78□□□□□ -0.68
SMCHD1-210ENST00000583800 ZNF831Q5JPB2 1677 aa10.78□□□□□ -0.68
SMCHD1-210ENST00000583800 C4AP0C0L4 1744 aa10.78□□□□□ -0.68
SMCHD1-210ENST00000583800 CICQ96RK0 1608 aaPredicted RBP10.77□□□□□ -0.68
SMCHD1-210ENST00000583800 GNPATO15228 680 aa10.77□□□□□ -0.69
SMCHD1-210ENST00000583800 PHKG2P15735 406 aa10.77□□□□□ -0.69
SMCHD1-210ENST00000583800 IFNL2Q8IZJ0 200 aa10.77□□□□□ -0.69
SMCHD1-210ENST00000583800 ZNF526Q8TF50 670 aaPredicted RBP10.77□□□□□ -0.69
SMCHD1-210ENST00000583800 POLKQ9UBT6 870 aa10.77□□□□□ -0.69
SMCHD1-210ENST00000583800 MYH14Q7Z406 1995 aaKnown RBP10.77□□□□□ -0.69
SMCHD1-210ENST00000583800 KDRP35968 1356 aa10.77□□□□□ -0.69
SMCHD1-210ENST00000583800 BRCA1P38398 1863 aaKnown RBP10.76□□□□□ -0.69
SMCHD1-210ENST00000583800 ATP6V1AP38606 617 aa10.76□□□□□ -0.69
SMCHD1-210ENST00000583800 TNNT2P45379 298 aaPredicted RBP10.76□□□□□ -0.69
SMCHD1-210ENST00000583800 EIF4A2Q14240 407 aaKnown RBP10.76□□□□□ -0.69
SMCHD1-210ENST00000583800 POLR3GLQ9BT43 218 aa10.76□□□□□ -0.69
SMCHD1-210ENST00000583800 GPBP1L1Q9HC44 474 aaPredicted RBP10.76□□□□□ -0.69
SMCHD1-210ENST00000583800 ATG3Q9NT62 314 aa10.76□□□□□ -0.69
SMCHD1-210ENST00000583800 VIRMAQ69YN4 1812 aaKnown RBP10.75□□□□□ -0.69
SMCHD1-210ENST00000583800 TRIM26Q12899 539 aaPredicted RBP10.75□□□□□ -0.69
SMCHD1-210ENST00000583800 MS4A4AQ96JQ5 239 aa10.75□□□□□ -0.69
SMCHD1-210ENST00000583800 PXDNLA1KZ92 1463 aa10.74□□□□□ -0.69
SMCHD1-210ENST00000583800 MMP10P09238 476 aa10.74□□□□□ -0.69
SMCHD1-210ENST00000583800 CEP350Q5VT06 3117 aa10.74□□□□□ -0.69
SMCHD1-210ENST00000583800 TJP1Q07157 1748 aa10.73□□□□□ -0.69
SMCHD1-210ENST00000583800 ARSIQ5FYB1 569 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms