RNA–Protein interactions for RNA: ENST00000582122.1

TOP3A-212, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 553 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-212ENST00000582122 CCDC87Q9NVE4 849 aa13.61□□□□□ -0.23
TOP3A-212ENST00000582122 TSPYL4Q9UJ04 414 aa13.61□□□□□ -0.23
TOP3A-212ENST00000582122 RRP7AQ9Y3A4 280 aaKnown RBP13.61□□□□□ -0.23
TOP3A-212ENST00000582122 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.6□□□□□ -0.23
TOP3A-212ENST00000582122 CYP19A1P11511 503 aaPredicted RBP13.6□□□□□ -0.23
TOP3A-212ENST00000582122 POLD1P28340 1107 aa13.6□□□□□ -0.23
TOP3A-212ENST00000582122 DNAJC10Q8IXB1 793 aa13.6□□□□□ -0.23
TOP3A-212ENST00000582122 TRIM35Q9UPQ4 493 aa13.6□□□□□ -0.23
TOP3A-212ENST00000582122 A0A087WZG4 1122 aa13.59□□□□□ -0.23
TOP3A-212ENST00000582122 RFC4P35249 363 aa13.59□□□□□ -0.23
TOP3A-212ENST00000582122 GNAI1P63096 354 aa13.59□□□□□ -0.23
TOP3A-212ENST00000582122 GPR162Q16538 588 aa13.59□□□□□ -0.23
TOP3A-212ENST00000582122 COL23A1Q86Y22 540 aaPredicted RBP13.59□□□□□ -0.23
TOP3A-212ENST00000582122 FAM9BQ8IZU0 186 aa13.59□□□□□ -0.23
TOP3A-212ENST00000582122 CFAP44Q96MT7 982 aa13.59□□□□□ -0.23
TOP3A-212ENST00000582122 COL5A3P25940 1745 aaPredicted RBP13.59□□□□□ -0.23
TOP3A-212ENST00000582122 CHL1O00533 1208 aa13.58□□□□□ -0.24
TOP3A-212ENST00000582122 GIGYF1O75420 1035 aaPredicted RBP13.58□□□□□ -0.24
TOP3A-212ENST00000582122 THUMPD2Q9BTF0 503 aaKnown RBP13.58□□□□□ -0.24
TOP3A-212ENST00000582122 IFT57Q9NWB7 429 aa13.58□□□□□ -0.24
TOP3A-212ENST00000582122 UBR3Q6ZT12 1888 aa13.57□□□□□ -0.24
TOP3A-212ENST00000582122 TJP1Q07157 1748 aa13.57□□□□□ -0.24
TOP3A-212ENST00000582122 PHF14O94880 888 aa13.57□□□□□ -0.24
TOP3A-212ENST00000582122 EIF4A1P60842 406 aaKnown RBP13.57□□□□□ -0.24
TOP3A-212ENST00000582122 INTS5Q6P9B9 1019 aaKnown RBP13.57□□□□□ -0.24
TOP3A-212ENST00000582122 NLGN1Q8N2Q7 840 aa13.57□□□□□ -0.24
TOP3A-212ENST00000582122 IL16Q14005 1332 aa13.57□□□□□ -0.24
TOP3A-212ENST00000582122 KCNQ3O43525 872 aa13.56□□□□□ -0.24
TOP3A-212ENST00000582122 HOXB7P09629 217 aa13.56□□□□□ -0.24
TOP3A-212ENST00000582122 IL6STP40189 918 aaPredicted RBP13.56□□□□□ -0.24
TOP3A-212ENST00000582122 SOS1Q07889 1333 aaPredicted RBP13.56□□□□□ -0.24
TOP3A-212ENST00000582122 ERBB4Q15303 1308 aa13.56□□□□□ -0.24
TOP3A-212ENST00000582122 RGL2O15211 777 aa13.55□□□□□ -0.24
TOP3A-212ENST00000582122 ZPR1O75312 459 aa13.55□□□□□ -0.24
TOP3A-212ENST00000582122 WDR63Q8IWG1 891 aa13.55□□□□□ -0.24
TOP3A-212ENST00000582122 ARHGEF1Q92888 912 aaKnown RBP13.55□□□□□ -0.24
TOP3A-212ENST00000582122 MIS18AQ9NYP9 233 aa13.55□□□□□ -0.24
TOP3A-212ENST00000582122 LAS1LQ9Y4W2 734 aaKnown RBP13.55□□□□□ -0.24
TOP3A-212ENST00000582122 KDM3BQ7LBC6 1761 aa13.55□□□□□ -0.24
TOP3A-212ENST00000582122 EIF5P55010 431 aaKnown RBP13.54□□□□□ -0.24
TOP3A-212ENST00000582122 WWC1Q8IX03 1113 aa13.54□□□□□ -0.24
TOP3A-212ENST00000582122 KLHL34Q8N239 644 aa13.54□□□□□ -0.24
TOP3A-212ENST00000582122 ZBTB1Q9Y2K1 713 aa13.54□□□□□ -0.24
TOP3A-212ENST00000582122 TUBGCP6Q96RT7 1819 aa13.54□□□□□ -0.24
TOP3A-212ENST00000582122 MYH14Q7Z406 1995 aaKnown RBP13.54□□□□□ -0.24
TOP3A-212ENST00000582122 ZNF853P0CG23 659 aa13.53□□□□□ -0.24
TOP3A-212ENST00000582122 CANXP27824 592 aaKnown RBP13.53□□□□□ -0.24
TOP3A-212ENST00000582122 USP16Q9Y5T5 823 aa13.53□□□□□ -0.24
TOP3A-212ENST00000582122 COL15A1P39059 1388 aa13.53□□□□□ -0.24
TOP3A-212ENST00000582122 A1BGP04217 495 aa13.52□□□□□ -0.25
TOP3A-212ENST00000582122 PELP1Q8IZL8 1130 aaKnown RBP13.52□□□□□ -0.25
TOP3A-212ENST00000582122 NARFQ9UHQ1 456 aa13.52□□□□□ -0.25
TOP3A-212ENST00000582122 USP42Q9H9J4 1324 aaKnown RBP13.52□□□□□ -0.25
TOP3A-212ENST00000582122 COL24A1Q17RW2 1714 aa13.52□□□□□ -0.25
TOP3A-212ENST00000582122 GRIN3BO60391 1043 aa13.51□□□□□ -0.25
TOP3A-212ENST00000582122 IFFO2Q5TF58 517 aa13.51□□□□□ -0.25
TOP3A-212ENST00000582122 AMIGO3Q86WK7 504 aa13.51□□□□□ -0.25
TOP3A-212ENST00000582122 ZNF652Q9Y2D9 606 aa13.51□□□□□ -0.25
TOP3A-212ENST00000582122 GOLGB1Q14789 3259 aaKnown RBP13.51□□□□□ -0.25
TOP3A-212ENST00000582122 GYS1P13807 737 aa13.5□□□□□ -0.25
TOP3A-212ENST00000582122 MBIPQ9NS73 344 aa13.5□□□□□ -0.25
TOP3A-212ENST00000582122 CLEC4GQ6UXB4 293 aa13.49□□□□□ -0.25
TOP3A-212ENST00000582122 MIER1Q8N108 512 aa13.49□□□□□ -0.25
TOP3A-212ENST00000582122 MYH16Q9H6N6 1097 aa13.49□□□□□ -0.25
TOP3A-212ENST00000582122 LAMB4A4D0S4 1761 aa13.48□□□□□ -0.25
TOP3A-212ENST00000582122 MSL1Q68DK7 614 aa13.48□□□□□ -0.25
TOP3A-212ENST00000582122 DZIP3Q86Y13 1208 aaKnown RBP13.48□□□□□ -0.25
TOP3A-212ENST00000582122 ZNF330Q9Y3S2 320 aaPredicted RBP13.48□□□□□ -0.25
TOP3A-212ENST00000582122 CD2APQ9Y5K6 639 aa13.48□□□□□ -0.25
TOP3A-212ENST00000582122 PARP3Q9Y6F1 533 aa13.48□□□□□ -0.25
TOP3A-212ENST00000582122 PRAMEF22A3QJZ6 481 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 MMP10P09238 476 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 GOLGA2Q08379 1002 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 HDGFL1Q5TGJ6 251 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 DUSP27Q5VZP5 1158 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 USPL1Q5W0Q7 1092 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 KIF6Q6ZMV9 814 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 NLGN2Q8NFZ4 835 aa13.47□□□□□ -0.25
TOP3A-212ENST00000582122 DDX21Q9NR30 783 aaKnown RBP eCLIP13.47□□□□□ -0.25
TOP3A-212ENST00000582122 DBF4Q9UBU7 674 aaPredicted RBP13.47□□□□□ -0.25
TOP3A-212ENST00000582122 ERVV-1B6SEH8 477 aa13.46□□□□□ -0.25
TOP3A-212ENST00000582122 EIF2S2P20042 333 aaKnown RBP13.46□□□□□ -0.25
TOP3A-212ENST00000582122 C4AP0C0L4 1744 aa13.46□□□□□ -0.25
TOP3A-212ENST00000582122 NBPF26B4DH59 902 aa13.45□□□□□ -0.26
TOP3A-212ENST00000582122 FKBP8Q14318 412 aa13.45□□□□□ -0.26
TOP3A-212ENST00000582122 CCDC30Q5VVM6 783 aa13.45□□□□□ -0.26
TOP3A-212ENST00000582122 NBPF10Q6P3W6 841 aaKnown RBP13.45□□□□□ -0.26
TOP3A-212ENST00000582122 SMIM5Q71RC9 77 aa13.45□□□□□ -0.26
TOP3A-212ENST00000582122 NBPF15Q8N660 670 aa13.45□□□□□ -0.26
TOP3A-212ENST00000582122 HYPKQ9NX55 129 aa13.45□□□□□ -0.26
TOP3A-212ENST00000582122 SRP68Q9UHB9 627 aaKnown RBP13.45□□□□□ -0.26
TOP3A-212ENST00000582122 SALL2Q9Y467 1007 aaPredicted RBP13.45□□□□□ -0.26
TOP3A-212ENST00000582122 E9PSI1 815 aa13.44□□□□□ -0.26
TOP3A-212ENST00000582122 CAMTA2O94983 1202 aa13.44□□□□□ -0.26
TOP3A-212ENST00000582122 TM4SF1P30408 202 aa13.44□□□□□ -0.26
TOP3A-212ENST00000582122 SETDB2Q96T68 719 aa13.44□□□□□ -0.26
TOP3A-212ENST00000582122 TBC1D2BQ9UPU7 963 aa13.44□□□□□ -0.26
TOP3A-212ENST00000582122 ATP10DQ9P241 1426 aa13.44□□□□□ -0.26
TOP3A-212ENST00000582122 ZNF521Q96K83 1311 aa13.43□□□□□ -0.26
TOP3A-212ENST00000582122 CEP350Q5VT06 3117 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms