RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CANXP27824 592 aaKnown RBP13.73□□□□□ -0.21
SS18-213ENST00000579640 ARHGAP45Q92619 1136 aa13.73□□□□□ -0.21
SS18-213ENST00000579640 TCERG1O14776 1098 aaKnown RBP13.72□□□□□ -0.21
SS18-213ENST00000579640 MS4A1P11836 297 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 HMGB2P26583 209 aaKnown RBP13.72□□□□□ -0.21
SS18-213ENST00000579640 ATP6V1AP38606 617 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 ZKSCAN2Q63HK3 967 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 DNAJC10Q8IXB1 793 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 NECTIN2Q92692 538 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 SLC4A9Q96Q91 983 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 DDX21Q9NR30 783 aaKnown RBP eCLIP13.72□□□□□ -0.21
SS18-213ENST00000579640 HYPKQ9NX55 129 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 CHPF2Q9P2E5 772 aa13.72□□□□□ -0.21
SS18-213ENST00000579640 PTPRCP08575 1304 aa13.71□□□□□ -0.21
SS18-213ENST00000579640 FRAT1Q92837 279 aaPredicted RBP13.71□□□□□ -0.21
SS18-213ENST00000579640 NOB1Q9ULX3 412 aaKnown RBP13.71□□□□□ -0.21
SS18-213ENST00000579640 NEFLP07196 543 aa13.71□□□□□ -0.22
SS18-213ENST00000579640 CYP19A1P11511 503 aaPredicted RBP13.7□□□□□ -0.22
SS18-213ENST00000579640 API5Q9BZZ5 524 aaKnown RBP13.7□□□□□ -0.22
SS18-213ENST00000579640 TNS1Q9HBL0 1735 aaKnown RBP13.69□□□□□ -0.22
SS18-213ENST00000579640 PLSCR1O15162 318 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 FLIIQ13045 1269 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 PDE3AQ14432 1141 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 PDIA6Q15084 440 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 SLC27A3Q5K4L6 730 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 ATF7IPQ6VMQ6 1270 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 CCNL1Q9UK58 526 aaPredicted RBP13.69□□□□□ -0.22
SS18-213ENST00000579640 RGPD3A6NKT7 1758 aaPredicted RBP13.69□□□□□ -0.22
SS18-213ENST00000579640 RGPD4Q7Z3J3 1758 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 COL5A3P25940 1745 aaPredicted RBP13.69□□□□□ -0.22
SS18-213ENST00000579640 PLIN1O60240 522 aa13.69□□□□□ -0.22
SS18-213ENST00000579640 ITPK1Q13572 414 aa13.68□□□□□ -0.22
SS18-213ENST00000579640 RREB1Q92766 1687 aa13.68□□□□□ -0.22
SS18-213ENST00000579640 APBA3O96018 575 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 A1BGP04217 495 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 TRIM27P14373 513 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 PROSER3Q2NL68 480 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 G2E3Q7L622 706 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 CNTNAP4Q9C0A0 1308 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 NBPF26B4DH59 902 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 DDX58O95786 925 aaKnown RBP13.67□□□□□ -0.22
SS18-213ENST00000579640 MYL6BP14649 208 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 FKBP5Q13451 457 aaPredicted RBP13.67□□□□□ -0.22
SS18-213ENST00000579640 NBPF14Q5TI25 921 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 NBPF10Q6P3W6 841 aaKnown RBP13.67□□□□□ -0.22
SS18-213ENST00000579640 LRP10Q7Z4F1 713 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 FTSJ3Q8IY81 847 aaKnown RBP13.67□□□□□ -0.22
SS18-213ENST00000579640 DZIP1LQ8IYY4 767 aaKnown RBP13.67□□□□□ -0.22
SS18-213ENST00000579640 NBPF15Q8N660 670 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 PHAXQ9H814 394 aaKnown RBP13.67□□□□□ -0.22
SS18-213ENST00000579640 CCDC87Q9NVE4 849 aa13.67□□□□□ -0.22
SS18-213ENST00000579640 ANXA1P04083 346 aa13.66□□□□□ -0.22
SS18-213ENST00000579640 IL6STP40189 918 aaPredicted RBP13.66□□□□□ -0.22
SS18-213ENST00000579640 CRKLP46109 303 aaKnown RBP13.66□□□□□ -0.22
SS18-213ENST00000579640 RC3H1Q5TC82 1133 aaKnown RBP13.66□□□□□ -0.22
SS18-213ENST00000579640 ILDR2Q71H61 639 aa13.66□□□□□ -0.22
SS18-213ENST00000579640 TAF1LQ8IZX4 1826 aa13.66□□□□□ -0.22
SS18-213ENST00000579640 SF3B2Q13435 895 aaKnown RBP13.65□□□□□ -0.22
SS18-213ENST00000579640 LINC00116Q8NCU8 138 aa13.65□□□□□ -0.22
SS18-213ENST00000579640 ABCC4O15439 1325 aa13.65□□□□□ -0.22
SS18-213ENST00000579640 INTS5Q6P9B9 1019 aaKnown RBP13.64□□□□□ -0.23
SS18-213ENST00000579640 NPM2Q86SE8 214 aaKnown RBP13.64□□□□□ -0.23
SS18-213ENST00000579640 CCDC125Q86Z20 511 aa13.64□□□□□ -0.23
SS18-213ENST00000579640 XAGE3Q8WTP9 111 aa13.64□□□□□ -0.23
SS18-213ENST00000579640 ZBTB1Q9Y2K1 713 aa13.64□□□□□ -0.23
SS18-213ENST00000579640 PXDNLA1KZ92 1463 aa13.64□□□□□ -0.23
SS18-213ENST00000579640 TXNRD1Q16881 649 aa13.64□□□□□ -0.23
SS18-213ENST00000579640 COPS6Q7L5N1 327 aa13.64□□□□□ -0.23
SS18-213ENST00000579640 PIP4K2AP48426 406 aaPredicted RBP13.63□□□□□ -0.23
SS18-213ENST00000579640 C20orf194Q5TEA3 1177 aa13.63□□□□□ -0.23
SS18-213ENST00000579640 KSR2Q6VAB6 950 aa13.63□□□□□ -0.23
SS18-213ENST00000579640 CLUAP1Q96AJ1 413 aa13.63□□□□□ -0.23
SS18-213ENST00000579640 MYH14Q7Z406 1995 aaKnown RBP13.63□□□□□ -0.23
SS18-213ENST00000579640 C4BP0C0L5 1744 aa13.63□□□□□ -0.23
SS18-213ENST00000579640 EIF5P55010 431 aaKnown RBP13.62□□□□□ -0.23
SS18-213ENST00000579640 AIMP1Q12904 312 aaKnown RBP13.62□□□□□ -0.23
SS18-213ENST00000579640 ERICH6BQ5W0A0 696 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 PANK1Q8TE04 598 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 LRRC4BQ9NT99 713 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 A0A087WZG4 1122 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 PI4KAP2A4QPH2 592 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 BAG6P46379 1132 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 CCT4P50991 539 aaKnown RBP13.62□□□□□ -0.23
SS18-213ENST00000579640 KCNQ4P56696 695 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 ANKRD13DQ6ZTN6 518 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 PI4KAP1Q8N8J0 262 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 PLBD2Q8NHP8 589 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 DNAAF4Q8WXU2 420 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 TNNQ9UQP3 1299 aa13.62□□□□□ -0.23
SS18-213ENST00000579640 ADCY9O60503 1353 aa13.61□□□□□ -0.23
SS18-213ENST00000579640 N4BP2Q86UW6 1770 aaPredicted RBP13.61□□□□□ -0.23
SS18-213ENST00000579640 SOCS7O14512 581 aa13.61□□□□□ -0.23
SS18-213ENST00000579640 RPS6KA4O75676 772 aa13.61□□□□□ -0.23
SS18-213ENST00000579640 RLBP1P12271 317 aa13.61□□□□□ -0.23
SS18-213ENST00000579640 MVPQ14764 893 aaKnown RBP13.61□□□□□ -0.23
SS18-213ENST00000579640 INTS3Q68E01 1043 aaKnown RBP13.61□□□□□ -0.23
SS18-213ENST00000579640 KIF6Q6ZMV9 814 aa13.61□□□□□ -0.23
SS18-213ENST00000579640 RIC3Q7Z5B4 369 aa13.61□□□□□ -0.23
SS18-213ENST00000579640 PROM2Q8N271 834 aa13.61□□□□□ -0.23
SS18-213ENST00000579640 F6X3S4 739 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms