RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 CYP19A1P11511 503 aaPredicted RBP23.57■■□□□ 1.36
CCDC40-213ENST00000574933 PRAMEF22A3QJZ6 481 aa23.56■■□□□ 1.36
CCDC40-213ENST00000574933 KRT24Q2M2I5 525 aa23.56■■□□□ 1.36
CCDC40-213ENST00000574933 DUSP27Q5VZP5 1158 aa23.56■■□□□ 1.36
CCDC40-213ENST00000574933 USP16Q9Y5T5 823 aa23.56■■□□□ 1.36
CCDC40-213ENST00000574933 STARD3NLO95772 234 aa23.55■■□□□ 1.36
CCDC40-213ENST00000574933 C8orf58Q8NAV2 365 aa23.55■■□□□ 1.36
CCDC40-213ENST00000574933 AKT1S1Q96B36 256 aa23.55■■□□□ 1.36
CCDC40-213ENST00000574933 CRKLP46109 303 aaKnown RBP23.53■■□□□ 1.36
CCDC40-213ENST00000574933 EXOSC9Q06265 439 aaKnown RBP23.52■■□□□ 1.36
CCDC40-213ENST00000574933 INTS5Q6P9B9 1019 aaKnown RBP23.52■■□□□ 1.36
CCDC40-213ENST00000574933 TSPYL6Q8N831 410 aa23.52■■□□□ 1.36
CCDC40-213ENST00000574933 ERBB4Q15303 1308 aa23.52■■□□□ 1.36
CCDC40-213ENST00000574933 CHMP4AQ9BY43 222 aa23.51■■□□□ 1.35
CCDC40-213ENST00000574933 ANO8Q9HCE9 1232 aaPredicted RBP23.51■■□□□ 1.35
CCDC40-213ENST00000574933 CCDC87Q9NVE4 849 aa23.51■■□□□ 1.35
CCDC40-213ENST00000574933 ZNF827Q17R98 1081 aa23.5■■□□□ 1.35
CCDC40-213ENST00000574933 TWISTNBQ3B726 338 aaPredicted RBP23.5■■□□□ 1.35
CCDC40-213ENST00000574933 NBPF14Q5TI25 921 aa23.5■■□□□ 1.35
CCDC40-213ENST00000574933 VAMP4O75379 141 aa23.49■■□□□ 1.35
CCDC40-213ENST00000574933 SLC15A2Q16348 729 aa23.49■■□□□ 1.35
CCDC40-213ENST00000574933 STK32BQ9NY57 414 aa23.49■■□□□ 1.35
CCDC40-213ENST00000574933 C4AP0C0L4 1744 aa23.49■■□□□ 1.35
CCDC40-213ENST00000574933 RPS6KA4O75676 772 aa23.48■■□□□ 1.35
CCDC40-213ENST00000574933 A1BGP04217 495 aa23.48■■□□□ 1.35
CCDC40-213ENST00000574933 AK7Q96M32 723 aa23.48■■□□□ 1.35
CCDC40-213ENST00000574933 ZBTB1Q9Y2K1 713 aa23.48■■□□□ 1.35
CCDC40-213ENST00000574933 ELL2O00472 640 aaPredicted RBP23.47■■□□□ 1.35
CCDC40-213ENST00000574933 CT47B1P0C2W7 299 aaPredicted RBP23.47■■□□□ 1.35
CCDC40-213ENST00000574933 NBPF26B4DH59 902 aa23.46■■□□□ 1.35
CCDC40-213ENST00000574933 HDGFL1Q5TGJ6 251 aa23.46■■□□□ 1.35
CCDC40-213ENST00000574933 NBPF10Q6P3W6 841 aaKnown RBP23.46■■□□□ 1.35
CCDC40-213ENST00000574933 NBPF15Q8N660 670 aa23.46■■□□□ 1.35
CCDC40-213ENST00000574933 YTHDC1Q96MU7 727 aaKnown RBP23.46■■□□□ 1.35
CCDC40-213ENST00000574933 GNPATO15228 680 aa23.45■■□□□ 1.34
CCDC40-213ENST00000574933 ADRA2BP18089 450 aa23.45■■□□□ 1.34
CCDC40-213ENST00000574933 EIF2S2P20042 333 aaKnown RBP23.45■■□□□ 1.34
CCDC40-213ENST00000574933 SSFA2P28290 1259 aa23.45■■□□□ 1.34
CCDC40-213ENST00000574933 IL6STP40189 918 aaPredicted RBP23.45■■□□□ 1.34
CCDC40-213ENST00000574933 EIF5P55010 431 aaKnown RBP23.45■■□□□ 1.34
CCDC40-213ENST00000574933 PDIA6Q15084 440 aa23.45■■□□□ 1.34
CCDC40-213ENST00000574933 CASZ1Q86V15 1759 aa23.45■■□□□ 1.34
CCDC40-213ENST00000574933 CCDC30Q5VVM6 783 aa23.44■■□□□ 1.34
CCDC40-213ENST00000574933 ZNF428Q96B54 188 aa23.44■■□□□ 1.34
CCDC40-213ENST00000574933 RTCBQ9Y3I0 505 aaKnown RBP23.44■■□□□ 1.34
CCDC40-213ENST00000574933 LRP10Q7Z4F1 713 aa23.43■■□□□ 1.34
CCDC40-213ENST00000574933 AMIGO3Q86WK7 504 aa23.43■■□□□ 1.34
CCDC40-213ENST00000574933 FLAD1Q8NFF5 587 aa23.43■■□□□ 1.34
CCDC40-213ENST00000574933 DDX21Q9NR30 783 aaKnown RBP eCLIP23.43■■□□□ 1.34
CCDC40-213ENST00000574933 TFCP2L1Q9NZI6 479 aa23.43■■□□□ 1.34
CCDC40-213ENST00000574933 BCORQ6W2J9 1755 aa23.42■■□□□ 1.34
CCDC40-213ENST00000574933 DBF4Q9UBU7 674 aaPredicted RBP23.42■■□□□ 1.34
CCDC40-213ENST00000574933 PNPLA7Q6ZV29 1317 aa23.41■■□□□ 1.34
CCDC40-213ENST00000574933 CANXP27824 592 aaKnown RBP23.41■■□□□ 1.34
CCDC40-213ENST00000574933 COL15A1P39059 1388 aa23.4■■□□□ 1.34
CCDC40-213ENST00000574933 NUP98P52948 1817 aa23.4■■□□□ 1.34
CCDC40-213ENST00000574933 COL24A1Q17RW2 1714 aa23.4■■□□□ 1.34
CCDC40-213ENST00000574933 CHPF2Q9P2E5 772 aa23.4■■□□□ 1.34
CCDC40-213ENST00000574933 SCN7AQ01118 1682 aa23.4■■□□□ 1.34
CCDC40-213ENST00000574933 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.39■■□□□ 1.33
CCDC40-213ENST00000574933 PROSER3Q2NL68 480 aa23.39■■□□□ 1.33
CCDC40-213ENST00000574933 NECTIN2Q92692 538 aa23.39■■□□□ 1.33
CCDC40-213ENST00000574933 A0A087WZG4 1122 aa23.38■■□□□ 1.33
CCDC40-213ENST00000574933 PIP4K2AP48426 406 aaPredicted RBP23.38■■□□□ 1.33
CCDC40-213ENST00000574933 TRAPPC3LQ5T215 181 aa23.38■■□□□ 1.33
CCDC40-213ENST00000574933 HYPKQ9NX55 129 aa23.38■■□□□ 1.33
CCDC40-213ENST00000574933 COL23A1Q86Y22 540 aaPredicted RBP23.37■■□□□ 1.33
CCDC40-213ENST00000574933 ARHGEF1Q92888 912 aaKnown RBP23.37■■□□□ 1.33
CCDC40-213ENST00000574933 STK31Q9BXU1 1019 aa23.37■■□□□ 1.33
CCDC40-213ENST00000574933 ALDH1L2Q3SY69 923 aa23.36■■□□□ 1.33
CCDC40-213ENST00000574933 RGL2O15211 777 aa23.35■■□□□ 1.33
CCDC40-213ENST00000574933 ANXA1P04083 346 aa23.35■■□□□ 1.33
CCDC40-213ENST00000574933 MYL6BP14649 208 aa23.35■■□□□ 1.33
CCDC40-213ENST00000574933 R3HDM1Q15032 1099 aaKnown RBP23.35■■□□□ 1.33
CCDC40-213ENST00000574933 SMIM5Q71RC9 77 aa23.35■■□□□ 1.33
CCDC40-213ENST00000574933 PHF14O94880 888 aa23.34■■□□□ 1.33
CCDC40-213ENST00000574933 BRPF1P55201 1214 aaPredicted RBP23.34■■□□□ 1.33
CCDC40-213ENST00000574933 NARFQ9UHQ1 456 aa23.34■■□□□ 1.33
CCDC40-213ENST00000574933 USP42Q9H9J4 1324 aaKnown RBP23.33■■□□□ 1.33
CCDC40-213ENST00000574933 ANKRD36CQ5JPF3 1778 aa23.33■■□□□ 1.33
CCDC40-213ENST00000574933 ARFGEF2Q9Y6D5 1785 aa23.33■■□□□ 1.33
CCDC40-213ENST00000574933 NPM2Q86SE8 214 aaKnown RBP23.33■■□□□ 1.33
CCDC40-213ENST00000574933 SLC16A10Q8TF71 515 aa23.33■■□□□ 1.33
CCDC40-213ENST00000574933 SLC4A2P04920 1241 aa23.32■■□□□ 1.32
CCDC40-213ENST00000574933 RFC4P35249 363 aa23.32■■□□□ 1.32
CCDC40-213ENST00000574933 RARSP54136 660 aaKnown RBP23.32■■□□□ 1.32
CCDC40-213ENST00000574933 SSH1Q8WYL5 1049 aa23.32■■□□□ 1.32
CCDC40-213ENST00000574933 COPS6Q7L5N1 327 aa23.31■■□□□ 1.32
CCDC40-213ENST00000574933 DZIP3Q86Y13 1208 aaKnown RBP23.31■■□□□ 1.32
CCDC40-213ENST00000574933 XAGE3Q8WTP9 111 aa23.31■■□□□ 1.32
CCDC40-213ENST00000574933 ERVV-1B6SEH8 477 aa23.3■■□□□ 1.32
CCDC40-213ENST00000574933 TCERG1O14776 1098 aaKnown RBP23.3■■□□□ 1.32
CCDC40-213ENST00000574933 CAMTA2O94983 1202 aa23.3■■□□□ 1.32
CCDC40-213ENST00000574933 TTLL7Q6ZT98 887 aa23.3■■□□□ 1.32
CCDC40-213ENST00000574933 MRPL50Q8N5N7 158 aaKnown RBP23.3■■□□□ 1.32
CCDC40-213ENST00000574933 PDGFDQ9GZP0 370 aaPredicted RBP23.3■■□□□ 1.32
CCDC40-213ENST00000574933 PHAXQ9H814 394 aaKnown RBP23.3■■□□□ 1.32
CCDC40-213ENST00000574933 ZNF330Q9Y3S2 320 aaPredicted RBP23.3■■□□□ 1.32
CCDC40-213ENST00000574933 MAP3K15Q6ZN16 1313 aa23.3■■□□□ 1.32
CCDC40-213ENST00000574933 PSDA5PKW4 1024 aaPredicted RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms